View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16011_low_4 (Length: 562)

Name: NF16011_low_4
Description: NF16011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16011_low_4
NF16011_low_4
[»] chr8 (5 HSPs)
chr8 (5-511)||(9628190-9628700)
chr8 (38-95)||(9628088-9628144)
chr8 (32-95)||(32920703-32920767)
chr8 (38-93)||(23766793-23766848)
chr8 (37-93)||(2628966-2629022)
[»] chr4 (3 HSPs)
chr4 (32-95)||(36804556-36804620)
chr4 (23-86)||(4959563-4959626)
chr4 (23-93)||(51646146-51646217)
[»] chr1 (2 HSPs)
chr1 (27-93)||(33703504-33703570)
chr1 (25-94)||(35077882-35077952)
[»] chr3 (1 HSPs)
chr3 (32-93)||(36540672-36540733)
[»] chr2 (2 HSPs)
chr2 (32-93)||(3389944-3390005)
chr2 (38-93)||(5071375-5071431)
[»] chr7 (1 HSPs)
chr7 (32-93)||(32312620-32312682)
[»] scaffold0340 (1 HSPs)
scaffold0340 (32-93)||(11777-11838)
[»] chr5 (2 HSPs)
chr5 (37-93)||(6887182-6887239)
chr5 (32-92)||(22397547-22397608)


Alignment Details
Target: chr8 (Bit Score: 405; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 5 - 511
Target Start/End: Original strand, 9628190 - 9628700
Alignment:
Q  5 gatgtcgaagaatataatatgtcgtattaagtcgacgaaatcacaaaagaaaaaccaaatatatgtgagcatcacttatttaaataaaaagattttttct 104  Q
    |||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9628190 gatgacgaacaatataatatgtcgtactaagtcgacgaaatcacaaaagaaaaaccaaatatatgtgagcatcacttatttaaattaaaagattttttct 9628289  T
Q  105 ttgttgcata---agattaaacaatgtattttccctcataaggataaattgattcattcattcaaatcggtataatatactgattgatgataaattaaaa 201  Q
    ||||||||||   | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9628290 ttgttgcatagaaaaattaaacaatgtattttcc-tcataaggataaattgattcattcattcaaatcggtataatatattgattgatgataaattaaaa 9628388  T
Q  202 attgctaaaactaacatactaaaaatcattgtataatctttctgagggaaaatctaatttgcaaacatactcaaaatcattgtttaatcttttagaggga 301  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||    
T  9628389 attgctaaaactaacatactaaaaatcattgtataatctttc-gagggaaaatataatttgcgaacatactcaaaatcattgtttaatctttcagaggga 9628487  T
Q  302 taaatttgataatcttttttaggcatatttctcaattgtctcctatacacaaaagaggttttccctctaggaccatccactacattgatcatccttcttt 401  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9628488 taaatttgataatcttttttagggatatttctcaattgtctcctataaacaaaagaggttttccctctaggaccatccactacattgaccatccttcttt 9628587  T
Q  402 tggtggttctttcatcgcatcat---gatgatgatgaagatgcatgcagcgttgtcgaaaggcattccattgaatgggttattcaatcgtaggcattaag 498  Q
    |||||||||||||||||||||||   ||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9628588 tggtggttctttcatcgcatcatctagatgacgaagaagatgcatgcagcgttgtcgaaaggcatgccattgaatgggttattcaatcgtaggcattaag 9628687  T
Q  499 catttatttttcg 511  Q
    |||||| ||||||    
T  9628688 catttacttttcg 9628700  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 9628144 - 9628088
Alignment:
Q  38 gacgaaatcacaaaagaaaaaccaaatatatgtgagcatcacttatttaaataaaaag 95  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9628144 gacgaaatcacaaaagaaaaaccaaatatatgtga-catcacttatttaaataaaaag 9628088  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 95
Target Start/End: Complemental strand, 32920767 - 32920703
Alignment:
Q  32 taagtcgacgaaatcacaaaagaaaaacc-aaatatatgtgagcatcacttatttaaataaaaag 95  Q
    |||| |||||||||||||||||||||||| || |  ||||||  |||||||||||||||||||||    
T  32920767 taagacgacgaaatcacaaaagaaaaacctaattcgatgtgaaaatcacttatttaaataaaaag 32920703  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 93
Target Start/End: Complemental strand, 23766848 - 23766793
Alignment:
Q  38 gacgaaatcacaaaagaaaaaccaaatatatgtgagcatcacttatttaaataaaa 93  Q
    ||||||||||| |||||||||| ||||| ||||||  ||||||||||| |||||||    
T  23766848 gacgaaatcacgaaagaaaaacgaaataaatgtgaaaatcacttattttaataaaa 23766793  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 2629022 - 2628966
Alignment:
Q  37 cgacgaaatcacaaaagaaaaaccaaatatatgtgagcatcacttatttaaataaaa 93  Q
    |||||||||||| |||||||||| || || ||||||  ||||||||||| |||||||    
T  2629022 cgacgaaatcacgaaagaaaaacaaagtagatgtgaaaatcacttatttcaataaaa 2628966  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 36804556 - 36804620
Alignment:
Q  32 taagtcgacgaaatcacaaaagaaaa-accaaatatatgtgagcatcacttatttaaataaaaag 95  Q
    |||| ||||||||||||||||||||| ||||||||||| |||  |||||||||||||||||||||    
T  36804556 taagacgacgaaatcacaaaagaaaaaaccaaatatatatgaaaatcacttatttaaataaaaag 36804620  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 4959563 - 4959626
Alignment:
Q  23 atgtcgtattaagtcgacgaaatcacaaaagaaaaaccaaatatatgtgagcatcacttattta 86  Q
    |||||||| |||| |||||||||||| |||||||||  ||||| ||||||  ||||||||||||    
T  4959563 atgtcgtactaagacgacgaaatcacgaaagaaaaataaaatagatgtgaaaatcacttattta 4959626  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 51646217 - 51646146
Alignment:
Q  23 atgtcgtattaagtcgacgaaatcacaaaag-aaaaaccaaatatatgtgagcatcacttatttaaataaaa 93  Q
    |||||| |||||| |||||||||||| |||| |||||| ||||| ||||||  ||||||||||| |||||||    
T  51646217 atgtcgcattaagacgacgaaatcacgaaagaaaaaacgaaatagatgtgaaaatcacttatttcaataaaa 51646146  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 93
Target Start/End: Original strand, 33703504 - 33703570
Alignment:
Q  27 cgtattaagtcgacgaaatcacaaaagaaaaaccaaatatatgtgagcatcacttatttaaataaaa 93  Q
    |||| |||| |||||||||||| |||||||||| ||||| ||||||  ||||||||||| |||||||    
T  33703504 cgtactaagacgacgaaatcacgaaagaaaaacgaaatagatgtgaaaatcacttatttcaataaaa 33703570  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 35077882 - 35077952
Alignment:
Q  25 gtcgtattaagtcgacgaaatcacaaaag-aaaaaccaaatatatgtgagcatcacttatttaaataaaaa 94  Q
    |||||| |||| |||||||||||| |||| |||||| ||||| ||||||  ||||||||||| ||||||||    
T  35077882 gtcgtactaagacgacgaaatcacgaaagaaaaaacgaaatagatgtgaaaatcacttatttcaataaaaa 35077952  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 36540672 - 36540733
Alignment:
Q  32 taagtcgacgaaatcacaaaagaaaaaccaaatatatgtgagcatcacttatttaaataaaa 93  Q
    |||| |||||||||||| |||||||||| ||||| ||||||  ||||||||||| |||||||    
T  36540672 taagacgacgaaatcacgaaagaaaaacaaaataaatgtgaaaatcacttatttcaataaaa 36540733  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 3390005 - 3389944
Alignment:
Q  32 taagtcgacgaaatcacaaaagaaaaaccaaatatatgtgagcatcacttatttaaataaaa 93  Q
    |||| |||| |||||| |||| ||||||||||||||||||   |||||||||||||||||||    
T  3390005 taagacgacaaaatcataaaataaaaaccaaatatatgtgcaaatcacttatttaaataaaa 3389944  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 5071375 - 5071431
Alignment:
Q  38 gacgaaatcacaaaagaaaaaccaaatat-atgtgagcatcacttatttaaataaaa 93  Q
    |||||||||||||||| |||||| ||| | ||||||  |||||||||||||||||||    
T  5071375 gacgaaatcacaaaaggaaaacctaatttaatgtgaaaatcacttatttaaataaaa 5071431  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 32312682 - 32312620
Alignment:
Q  32 taagtcgacgaaatcacaaaagaaaaacc-aaatatatgtgagcatcacttatttaaataaaa 93  Q
    |||| ||| |||||||||||||||||||| |||||||| | |  |||||||||||||||||||    
T  32312682 taagacgaagaaatcacaaaagaaaaacctaaatatatttaaaaatcacttatttaaataaaa 32312620  T

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Target: scaffold0340 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 11777 - 11838
Alignment:
Q  32 taagtcgacgaaatcacaaaagaaaaaccaaatatatgtgagcatcacttatttaaataaaa 93  Q
    |||| ||| |||||||| |||||||||| ||||| ||||||  ||||||||||| |||||||    
T  11777 taagacgatgaaatcacgaaagaaaaacgaaatagatgtgaaaatcacttatttcaataaaa 11838  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 6887182 - 6887239
Alignment:
Q  37 cgacgaaatcacaaaag-aaaaaccaaatatatgtgagcatcacttatttaaataaaa 93  Q
    ||||||||||||||||| |||||| ||||| ||||||  ||||||||||| |||||||    
T  6887182 cgacgaaatcacaaaagaaaaaacaaaatagatgtgaaaatcacttatttcaataaaa 6887239  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 22397547 - 22397608
Alignment:
Q  32 taagtcgacgaaatcacaaaagaaaaacc-aaatatatgtgagcatcacttatttaaataaa 92  Q
    |||| |||||||||||||||||||||||| ||||| ||||||  || |||||||| ||||||    
T  22397547 taagacgacgaaatcacaaaagaaaaaccgaaatagatgtgaaaattacttattttaataaa 22397608  T

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