View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16011_low_7 (Length: 448)
Name: NF16011_low_7
Description: NF16011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16011_low_7 |
 | |
|
| [»] scaffold0009 (1 HSPs) |
| | |
|
| [»] scaffold0031 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 159 - 429
Target Start/End: Complemental strand, 29868326 - 29868056
Alignment:
| Q |
159 |
ggacagtcaagagtattttctgaaatattcttaaatcagacaattcagaaccaagcaatcttactttgtttgcaatgctaataagtttatttgcatacta |
258 |
Q |
| |
|
||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
29868326 |
ggacagtcacgagtattttctgaactattcttgaatcagacaattcagaaccaagcaatcttactttgttagcaatgctaataagtttatttgcatactc |
29868227 |
T |
|
| Q |
259 |
tttgattgattcagactccgtcatcttttgtatctcaaattctcgaatcaaattaagcgcttgcattctcctaattctttcatttccttcatattcaatt |
358 |
Q |
| |
|
||| |||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| || |
|
|
| T |
29868226 |
tttaattgtttcagactccttcatcttttgcatctcaaattctcgaatcaaattaagcgcttgcattcccctaattctttcatctccttcatattcagtt |
29868127 |
T |
|
| Q |
359 |
ttgaggaaattccatatttcaaatgttgatttgatggtcataattttggttaagatttcttctgagacagc |
429 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
29868126 |
ttgaggaaattccatatttcaaatgctgatttgatggtcataattctggtgaagatttcttctgagacagc |
29868056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 159 - 427
Target Start/End: Complemental strand, 626850 - 626582
Alignment:
| Q |
159 |
ggacagtcaagagtattttctgaaatattcttaaatcagacaattcagaaccaagcaatcttactttgtttgcaatgctaataagtttatttgcatacta |
258 |
Q |
| |
|
||||||||| |||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
626850 |
ggacagtcacaagtattttctgacctattcttgaatcagataattcagaaccaagcaatcttactttgttagcaatgctaataagtttatttgcatactc |
626751 |
T |
|
| Q |
259 |
tttgattgattcagactccgtcatcttttgtatctcaaattctcgaatcaaattaagcgcttgcattctcctaattctttcatttccttcatattcaatt |
358 |
Q |
| |
|
||| |||| |||||||||| |||||||||| ||||||||||||| |||||||||||| |||||||| | |||||||||||||| |||||||||||||||| |
|
|
| T |
626750 |
tttaattgtttcagactccttcatcttttgcatctcaaattctccaatcaaattaagtgcttgcatccccctaattctttcatctccttcatattcaatt |
626651 |
T |
|
| Q |
359 |
ttgaggaaattccatatttcaaatgttgatttgatggtcataattttggttaagatttcttctgagaca |
427 |
Q |
| |
|
|||| || ||||||||||||||||| |||||||||| |||||||| |||| |||||||||||||||||| |
|
|
| T |
626650 |
ttgaagatattccatatttcaaatgctgatttgatgatcataattctggtgaagatttcttctgagaca |
626582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 16179849 - 16179758
Alignment:
| Q |
65 |
tttcaatttctagca-attcatagttcccattcgaatttctttcacattcagaattcgaatttcttccccatgtaagtattttgttgcctcc |
155 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||| ||||||| |
|
|
| T |
16179849 |
tttcaatttcttgcagattcatagttcccattcgaatttctttcatattcagaattcaaatttcttccccaggtaagtatttttctgcctcc |
16179758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 159 - 429
Target Start/End: Original strand, 20786023 - 20786293
Alignment:
| Q |
159 |
ggacagtcaagagtattttctgaaatattcttaaatcagacaattcagaaccaagcaatcttactttgtttgcaatgctaataagtttatttgcatacta |
258 |
Q |
| |
|
||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
20786023 |
ggacagtcacgagtattttctgaactattcttgaatcagacaattcagaaccaagcaatcttactttgttagcaatgctaataagtttatttgcatactc |
20786122 |
T |
|
| Q |
259 |
tttgattgattcagactccgtcatcttttgtatctcaaattctcgaatcaaattaagcgcttgcattctcctaattctttcatttccttcatattcaatt |
358 |
Q |
| |
|
||| |||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| || |
|
|
| T |
20786123 |
tttaattgtttcagactccttcatcttttgcatctcaaattctcgaatcaaattaagcgcttgcattcccctaattctttcatctccttcatattcagtt |
20786222 |
T |
|
| Q |
359 |
ttgaggaaattccatatttcaaatgttgatttgatggtcataattttggttaagatttcttctgagacagc |
429 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
20786223 |
ttgaggaaattccatatttcaaatgctgatttgatggtcataattctggtgaagatttcttctgagacagc |
20786293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 159 - 427
Target Start/End: Complemental strand, 29470038 - 29469770
Alignment:
| Q |
159 |
ggacagtcaagagtattttctgaaatattcttaaatcagacaattcagaaccaagcaatcttactttgtttgcaatgctaataagtttatttgcatacta |
258 |
Q |
| |
|
||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
29470038 |
ggacagtcacgagtattttctgaactattcttgaatcagacaattcagaaccaagcaatcttactttgttagcaatgttaataagtttatttgcatactc |
29469939 |
T |
|
| Q |
259 |
tttgattgattcagactccgtcatcttttgtatctcaaattctcgaatcaaattaagcgcttgcattctcctaattctttcatttccttcatattcaatt |
358 |
Q |
| |
|
||| |||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| || |
|
|
| T |
29469938 |
tttaattgtttcagactccttcatcttttgcatctcaaattctcgaatcaaattaagcgcttgcattcccctaattctttcatctccttcatattcagtt |
29469839 |
T |
|
| Q |
359 |
ttgaggaaattccatatttcaaatgttgatttgatggtcataattttggttaagatttcttctgagaca |
427 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
29469838 |
ttgaggaaattccatatttcaaatgctgatttgatggtcataattctggtgaagatttcttctgagaca |
29469770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 159 - 429
Target Start/End: Complemental strand, 19965792 - 19965522
Alignment:
| Q |
159 |
ggacagtcaagagtattttctgaaatattcttaaatcagacaattcagaaccaagcaatcttactttgtttgcaatgctaataagtttatttgcatacta |
258 |
Q |
| |
|
||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
19965792 |
ggacagtcacgagtattttctgaactattcttgaatcagacaattcagaaccaagcaatcttactttgttagcaatgctaataagtttatttgcatactc |
19965693 |
T |
|
| Q |
259 |
tttgattgattcagactccgtcatcttttgtatctcaaattctcgaatcaaattaagcgcttgcattctcctaattctttcatttccttcatattcaatt |
358 |
Q |
| |
|
||| |||| |||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||| || |
|
|
| T |
19965692 |
tttaattgtttcagactccttcatcttttgcatctcaaattctctaatcaaattaagcgcttgcattcccctaattctttcatctccttcatattcagtt |
19965593 |
T |
|
| Q |
359 |
ttgaggaaattccatatttcaaatgttgatttgatggtcataattttggttaagatttcttctgagacagc |
429 |
Q |
| |
|
|| |||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
19965592 |
ttaaggaaattccatatttcaaatgctgatttgatggtcataattctggtgaagatttcttctgagacagc |
19965522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 159 - 429
Target Start/End: Original strand, 21027204 - 21027474
Alignment:
| Q |
159 |
ggacagtcaagagtattttctgaaatattcttaaatcagacaattcagaaccaagcaatcttactttgtttgcaatgctaataagtttatttgcatacta |
258 |
Q |
| |
|
||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
21027204 |
ggacagtcacgagtattttctgaactattcttgaatcagacaattcagaaccaagcaatcttactttgttagcaatgctaataagtttatttgcatactc |
21027303 |
T |
|
| Q |
259 |
tttgattgattcagactccgtcatcttttgtatctcaaattctcgaatcaaattaagcgcttgcattctcctaattctttcatttccttcatattcaatt |
358 |
Q |
| |
|
||| |||| |||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||| || |
|
|
| T |
21027304 |
tttaattgtttcagactccttcatcttttgcatctcaaattctcaaatcaaattaagcgcttgcattcccctaattctttcatctccttcatattcagtt |
21027403 |
T |
|
| Q |
359 |
ttgaggaaattccatatttcaaatgttgatttgatggtcataattttggttaagatttcttctgagacagc |
429 |
Q |
| |
|
|| |||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
21027404 |
ttaaggaaattccatatttcaaatgctgatttgatggtcataattctggtgaagatttcttctgagacagc |
21027474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 290 - 424
Target Start/End: Original strand, 6367793 - 6367927
Alignment:
| Q |
290 |
atctcaaattctcgaatcaaattaagcgcttgcattctcctaattctttcatttccttcatattcaattttgaggaaattccatatttcaaatgttgatt |
389 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||| |||||| ||||||||||||| ||||||||||||| || || |
|
|
| T |
6367793 |
atctcaaattctcgaatgaaattaagcgcttgcattcccctaattctttcatctccttcgtattcagttttgaggaaatttcatatttcaaatgctggtt |
6367892 |
T |
|
| Q |
390 |
tgatggtcataattttggttaagatttcttctgag |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
6367893 |
tgatggtcataattttggttaagatttcttctgag |
6367927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 163 - 429
Target Start/End: Original strand, 33721527 - 33721793
Alignment:
| Q |
163 |
agtcaagagtattttctgaaatattcttaaatcagacaattcagaaccaagcaatcttactttgtttgcaatgctaataagtttatttgcatactatttg |
262 |
Q |
| |
|
||||| |||||||||||||| ||||||| ||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
33721527 |
agtcacgagtattttctgaactattcttgaatcagataattcagaaccatgcaatcttactttgttagcaatgctaataagtttatttgcatactcttta |
33721626 |
T |
|
| Q |
263 |
attgattcagactccgtcatcttttgtatctcaaattctcgaatcaaattaagcgcttgcattctcctaattctttcatttccttcatattcaattttga |
362 |
Q |
| |
|
|||| |||||||||| |||||||||| |||||||||||||||||||||||||| |||||||| | |||||||||||||| ||||||||||||| |||||| |
|
|
| T |
33721627 |
attgtttcagactccttcatcttttgcatctcaaattctcgaatcaaattaagtgcttgcatccccctaattctttcatctccttcatattcagttttga |
33721726 |
T |
|
| Q |
363 |
ggaaattccatatttcaaatgttgatttgatggtcataattttggttaagatttcttctgagacagc |
429 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
33721727 |
ggaaattccatatttcaaatgctgatttgatggtcataattctggtgaagatttcttctgagacagc |
33721793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 183; Significance: 8e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 163 - 429
Target Start/End: Original strand, 28698741 - 28699007
Alignment:
| Q |
163 |
agtcaagagtattttctgaaatattcttaaatcagacaattcagaaccaagcaatcttactttgtttgcaatgctaataagtttatttgcatactatttg |
262 |
Q |
| |
|
||||| |||||||||||||| ||||||| ||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
28698741 |
agtcacgagtattttctgaactattcttgaatcagataattcagaaccaaacaatcttactttgttagcaatgctaataagtttatttgcatactcttta |
28698840 |
T |
|
| Q |
263 |
attgattcagactccgtcatcttttgtatctcaaattctcgaatcaaattaagcgcttgcattctcctaattctttcatttccttcatattcaattttga |
362 |
Q |
| |
|
|||| |||||||||| |||||||||| |||||||||||||||||||||||||| | |||||| | |||||||||||||| ||||||||||||| |||||| |
|
|
| T |
28698841 |
attgtttcagactccttcatcttttgcatctcaaattctcgaatcaaattaagtgtttgcatccccctaattctttcatctccttcatattcagttttga |
28698940 |
T |
|
| Q |
363 |
ggaaattccatatttcaaatgttgatttgatggtcataattttggttaagatttcttctgagacagc |
429 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||| |
|
|
| T |
28698941 |
ggaaattccatatttcaaatgctgatttgatggttataattatggtgaagatttcttctgagacagc |
28699007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 169254 - 169304
Alignment:
| Q |
105 |
ttcacattcagaattcgaatttcttccccatgtaagtattttgttgcctcc |
155 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||| ||||||| |
|
|
| T |
169254 |
ttcacattcagaattcaaatttcttccccaggtaagtattttcctgcctcc |
169304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Complemental strand, 93301 - 93272
Alignment:
| Q |
39 |
atcattagccttcaaatctctttcaatttc |
68 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
93301 |
atcattagccttcaaatctctttcaatttc |
93272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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