View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16012_low_10 (Length: 250)
Name: NF16012_low_10
Description: NF16012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16012_low_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 11 - 191
Target Start/End: Complemental strand, 41447498 - 41447318
Alignment:
| Q |
11 |
cacagaaggtaaatgaggaatgatcaaacaacttggagaaaataaaaggaaatgagtggtgatactttgactctaggaataactattagaggaattactc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41447498 |
cacagaaggtaaatgaggaatgatcaaacaacttggagaaaataaaaggaaatgagtggtgatactttgactctaggaataactattagtggaattactc |
41447399 |
T |
|
| Q |
111 |
aacttaacaaatcattataaaccactatgaagctctgacacaacctggacatgtcgacaccctaatgtaaaaaacacaaga |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41447398 |
aacttaacaaatcattataaaccactatgaagctctgacacaacctggacatgtcgacaccctaatgtaaaaaacacaaga |
41447318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 11 - 143
Target Start/End: Complemental strand, 41457684 - 41457552
Alignment:
| Q |
11 |
cacagaaggtaaatgaggaatgatcaaacaacttggagaaaataaaaggaaatgagtggtgatactttgactctaggaataactattagaggaattactc |
110 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| |
|
|
| T |
41457684 |
cacagaaggtaaaggaggaatgatcaaacaacttggagaaaataaaaggaaatgagtggtgatactttgactctaggaataactcttacatgaattactc |
41457585 |
T |
|
| Q |
111 |
aacttaacaaatcattataaaccactatgaagc |
143 |
Q |
| |
|
|||||||||| |||| |||||| |||||||||| |
|
|
| T |
41457584 |
aacttaacaagtcatgataaacaactatgaagc |
41457552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 208 - 250
Target Start/End: Complemental strand, 41447290 - 41447248
Alignment:
| Q |
208 |
ttaatcaaaataagatatatatctattacaaacatgttgattt |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41447290 |
ttaatcaaaataagatatatatctattacaaacatgttgattt |
41447248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 11 - 143
Target Start/End: Original strand, 16418971 - 16419100
Alignment:
| Q |
11 |
cacagaaggtaaatgaggaatgatcaaacaacttggagaaaataaaaggaaatgagtggtgatactttgactctaggaataactattagaggaattactc |
110 |
Q |
| |
|
||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| |
|
|
| T |
16418971 |
cacagaaggtaaaggtggaatgatcaaac---ttggagaaaataaaaggaaatgagtggtgatactttgactctaggaataactcttacatgaattactc |
16419067 |
T |
|
| Q |
111 |
aacttaacaaatcattataaaccactatgaagc |
143 |
Q |
| |
|
|||||||||| ||||||||||| ||||| |||| |
|
|
| T |
16419068 |
aacttaacaagtcattataaacaactatcaagc |
16419100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University