View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16012_low_13 (Length: 205)
Name: NF16012_low_13
Description: NF16012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16012_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 12 - 186
Target Start/End: Complemental strand, 2603066 - 2602897
Alignment:
| Q |
12 |
tgtgtggttttgggacggatgaggtaaatgtctgtttaaacatgagggaataataatatccaaaatgtttttgcttctttctcttgataaaataaatgct |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2603066 |
tgtgtggttttgggacggatgaggtaaatgtctgtttaaacatgagggaataataatatccaaaatgtttttgcttctttttcttgataaaataaatgct |
2602967 |
T |
|
| Q |
112 |
cttacttagcttgtgcaaggaaacgaaatacattcaatgtaaattattactactaggttagaatagaaggaaacc |
186 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
2602966 |
ctta-----cttgtgcaaggaaacgaaatacattcaatgtaaattattactaataggttggaatagaaggaaacc |
2602897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University