View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16012_low_3 (Length: 329)
Name: NF16012_low_3
Description: NF16012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16012_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 124; Significance: 9e-64; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 185 - 316
Target Start/End: Complemental strand, 5646776 - 5646645
Alignment:
| Q |
185 |
aactggaagaacataagagttcaagattggtgatacaactagcgttgagcattatttgacttcaattttacgtgtaattcttgttttccaattgttagga |
284 |
Q |
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| T |
5646776 |
aactggaagagcataagagttcaagattggtgatacaactagcgttgagcattatttgacttcaattttacgtgtaattcttgttttccaattgttagga |
5646677 |
T |
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| Q |
285 |
attagcttatttggacgagaacctgtgtttat |
316 |
Q |
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| T |
5646676 |
attagcttatttggacgagaacctttgtttat |
5646645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 13 - 142
Target Start/End: Complemental strand, 5646902 - 5646773
Alignment:
| Q |
13 |
aatattaaaaggaatgaaattatctcactaaagtttatattttatctttgatcatcaatataaatttcaacttaacataagtgtttattgattcatgtga |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
5646902 |
aatattaaaaggaatgaaattatctcactaaagtttataccttatctttgatcatcaatataaatttcaacttgacttaagtgtttattgattcatgtga |
5646803 |
T |
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| Q |
113 |
aattattttgccctatttaagttaaaaact |
142 |
Q |
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| T |
5646802 |
gaaaattttgccctatttaagttaaaaact |
5646773 |
T |
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