View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16012_low_4 (Length: 328)
Name: NF16012_low_4
Description: NF16012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16012_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 313
Target Start/End: Complemental strand, 10181931 - 10181635
Alignment:
| Q |
14 |
catcaagcccttgtaaacaacaaataactcagcacgaagaatgtcagagacatgttggatgtcgacagagaaacctgataaataaaaccctccattattt |
113 |
Q |
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||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
10181931 |
catcaggcccttgtaaacaacaaataactcagcatgaagaatgtcagag----gttggatgtcgacagagaaatctgataaataaaaccctccattattt |
10181836 |
T |
|
| Q |
114 |
cttaaggcaccgtcatagccggttctaataggagagtcgagacaactaccatcaatattaagaatgatgctggagtaattgttattgtt-cacttgagaa |
212 |
Q |
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|||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
10181835 |
cttaagacactaccatagccggttctaataagagagtcgagacaactaccatcaatattaagaatgatgctagagtaattgttattgttccacttgagaa |
10181736 |
T |
|
| Q |
213 |
ttctataagctaaagtgtaatttgaagccgaaggaaatcaaaatgttaatgttccaaccatattgtgaatgttagaggagatacacttgataggccaatt |
312 |
Q |
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| T |
10181735 |
gtctataagctaaagtgtaatttgaagccgaaggaagtcaaaatgttaatgttccaaccatattgtgaatgttagaggagatacacttgataggccaatt |
10181636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 199
Target Start/End: Original strand, 31225183 - 31225300
Alignment:
| Q |
82 |
agaaacctgataaataaaaccctccattatttcttaaggcaccgtcatagccggttctaataggagagtcgagacaactaccatcaatattaagaatgat |
181 |
Q |
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||||||||||||||||||| | | | |||||||||| ||||| ||||||| |||||||| |||| |||| ||||||||||||| ||||| ||||| |
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| T |
31225183 |
agaaacctgataaataaaaacttgtttcatttcttaagacaccgccatagccaactctaatagcagagccgaggcaactaccatcaacgttaaggatgat |
31225282 |
T |
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| Q |
182 |
gctggagtaattgttatt |
199 |
Q |
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| T |
31225283 |
gctaaagttattgttatt |
31225300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 21 - 203
Target Start/End: Complemental strand, 13357293 - 13357111
Alignment:
| Q |
21 |
cccttgtaaacaacaaataactcagcacgaagaatgtcagagacatgttggatgtcgacagagaaacctgataaataaaaccctccattatttcttaagg |
120 |
Q |
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|||||| ||| | ||||||||| |||| ||||||||||||| | ||||||||||| | |||||||||||||||||||||||| |||||||||||||| |
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| T |
13357293 |
cccttggaaatagcaaataacttagcatgaagaatgtcagacaaatgttggatgtagtaagagaaacctgataaataaaacccaacattatttcttaaga |
13357194 |
T |
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| Q |
121 |
caccgtcatagccggttctaataggagagtcgagacaactaccatcaatattaagaatgatgctggagtaattgttattgttc |
203 |
Q |
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| T |
13357193 |
ctccgacatagcaagctctaataggagagccgagacaactaacatcaacattaagaatgatgttggagtgattgttattgttc |
13357111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 181
Target Start/End: Original strand, 25665551 - 25665711
Alignment:
| Q |
21 |
cccttgtaaacaacaaataactcagcacgaagaatgtcagagacatgttggatgtcgacagagaaacctgataaataaaaccctccattatttcttaagg |
120 |
Q |
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|||||||||| |||||||||||||||| ||||||||||||| ||||||||||| | | ||| ||||||||||||||||| |||||||||| ||| |
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| T |
25665551 |
cccttgtaaataacaaataactcagcatgaagaatgtcagatgaatgttggatgtaataaaaaaaatctgataaataaaaccctgcattatttctgaaga |
25665650 |
T |
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| Q |
121 |
caccgtcatagccggttctaataggagagtcgagacaactaccatcaatattaagaatgat |
181 |
Q |
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||| | ||| || | ||||||||||||||| |||||||||||| ||| |||||||||||| |
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| T |
25665651 |
cactgctataaccagctctaataggagagtcaagacaactaccaacaacattaagaatgat |
25665711 |
T |
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