View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16012_low_5 (Length: 306)
Name: NF16012_low_5
Description: NF16012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16012_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 937510 - 937807
Alignment:
| Q |
1 |
atcaatgaaaatatttttcttcttatcttcctcgcttgttttattccaatctctgaaaaatacctcaatttccttgtgtgatggtacatcataatgctta |
100 |
Q |
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| T |
937510 |
atcaatgaaaatatttttcttcttatcttcctcgcttgttttattccaatctctgaaaaatacctcaatttccttgtgtgatggtacatcataatgctta |
937609 |
T |
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| Q |
101 |
ccaggcaaggccatgttaatagtgctagtnnnnnnnnnnnnnnnnnttgtcagaaactataggcaaaattgatatcaaatgttgaatatggaaattgtta |
200 |
Q |
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| T |
937610 |
ccaggcaaggccatgttaatagtgctagtaaaaaacaagaaaaaaattgtcagaaactatagacaaaattgatatcaaatgttgaatatggaaattgtta |
937709 |
T |
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| Q |
201 |
attata---nnnnnnnnataaacaaatgttatatgtttgttgttatgttagtattttctcattcacaagacattgaactacgttctttcaattccttt |
295 |
Q |
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| T |
937710 |
attatatttttttttttataaacaaatgttatatatttgttgttatgttagtattttctcattcacaagacattgaactacgttctttcaattccttt |
937807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 62 - 129
Target Start/End: Complemental strand, 7584115 - 7584048
Alignment:
| Q |
62 |
acctcaatttccttgtgtgatggtacatcataatgcttaccaggcaaggccatgttaatagtgctagt |
129 |
Q |
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| T |
7584115 |
acctcaatttccttgtttgatggtacatcatgatgctaaccacgcaatgccatgttgatagtgctagt |
7584048 |
T |
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