View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16012_low_9 (Length: 251)
Name: NF16012_low_9
Description: NF16012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16012_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 6 - 156
Target Start/End: Original strand, 30342429 - 30342580
Alignment:
| Q |
6 |
tgagaagaaatttgtcacagagacctc-tcagctagtaaagtaaaagttcttataacaacattgaatataacctactaaacaaaaagagtaacagaaact |
104 |
Q |
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| T |
30342429 |
tgagatgaaatttgtcagagacacctcctcagctagtaaagtaaaagttcttataacaacattgaatataacctactaaagaaaaaaagtaacagaaact |
30342528 |
T |
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| Q |
105 |
aaagaaagaatgtaaacatcaaattacctgatttccgaagaatttcgtaaag |
156 |
Q |
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| T |
30342529 |
aaagaaagaatgtaaacatcaaattacctgatttccgaggaatttcgcaaag |
30342580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 30343773 - 30343849
Alignment:
| Q |
159 |
cataccatgattcgcaacactgatttccctacaataacaggacattcagtactatatgattgaaaagaaatagttgt |
235 |
Q |
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| T |
30343773 |
cataccatgattagcaacactgatttccctacaataagaggacattcagtactatatgattgaaaagaaatagttgt |
30343849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 61 - 156
Target Start/End: Original strand, 29220876 - 29220971
Alignment:
| Q |
61 |
caacattgaatataacctactaaacaaaaagagtaacagaaactaaagaaagaatgtaaacatcaaattacctgatttccgaagaatttcgtaaag |
156 |
Q |
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| T |
29220876 |
caacattgactataacctactaaagaaaaagagtaacaaaaacttaagaaagaacgtaagcatcaaattacctgatttctggggaatttcgcaaag |
29220971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 29221016 - 29221070
Alignment:
| Q |
159 |
cataccatgattcgcaacactgatttccctacaataacaggacattcagtactat |
213 |
Q |
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| T |
29221016 |
cataccatgattagcaacaatgatttccctacaataacaggacattcattactat |
29221070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 29220784 - 29220830
Alignment:
| Q |
13 |
aaatttgtcacagagacctc-tcagctagtaaagtaaaagttcttat |
58 |
Q |
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| T |
29220784 |
aaatttgtcatagaggcctcctcagctagtaaagtaaaagttcttat |
29220830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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