View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16013_high_12 (Length: 305)
Name: NF16013_high_12
Description: NF16013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16013_high_12 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 5654865 - 5654588
Alignment:
| Q |
18 |
aagaaaggaacaaccaatcaattcatgaataacaatttcatacaactaaaatgatattcatagatccaaagcacaagaaaatgctaagaatgtaattatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5654865 |
aagaaaggaacaaccaatcaattcatgaataacaatttcatacaactaaaatgatattcatagatccaaagcacaagaaaatgctaagaatgtaattatt |
5654766 |
T |
|
| Q |
118 |
taagcactaataaataaaacaatgaatagcttatgtgtttcacaaactcaagtatataaaagtaaaattaagataatgaggctcaaatacaagtgaaatg |
217 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5654765 |
taagcacttataaataaaacaatgaatagcttatgtgtttcacaaactcaagcatataaaagtaaaattaagataatgaggctcaaatacaagtgaaatg |
5654666 |
T |
|
| Q |
218 |
caatatcaggccaccaaaacatgaacccttaatt--------tcttgattacaactaaatacaaaatgttggtccaag |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5654665 |
caatatcaggccaccaaaacatgaacccttaatttcttaatttcttgattacaactaaatataaaatgttggtccaag |
5654588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University