View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16013_high_22 (Length: 205)
Name: NF16013_high_22
Description: NF16013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16013_high_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 15 - 177
Target Start/End: Original strand, 41246687 - 41246849
Alignment:
| Q |
15 |
gaagggggaatgcaagatttccgtatagcagcagcccaaggtaaagaaacagttgctggcttcagaaaattaaaggaaagtttagaagttaatttaccat |
114 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41246687 |
gaagggggaatgcaagatttccatatagcagcagcccaaggtaaagaaacagttgctggcttcagaaaattaaaggaaagtttagaagttaatttaccat |
41246786 |
T |
|
| Q |
115 |
cggaagagtgcagccaaacaagagcatcaggcaaaggagcggttggtaaaaccaagctagcaa |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41246787 |
cggaagagtgcagccaaacaagagcatcaggcaaaggagcggttggtaaaaccaagcaagcaa |
41246849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 7e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 24 - 168
Target Start/End: Original strand, 10707289 - 10707433
Alignment:
| Q |
24 |
atgcaagatttccgtatagcagcagcccaaggtaaagaaacagttgctggcttcagaaaattaaaggaaagtttagaagttaatttaccatcggaagagt |
123 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||| ||| |
|
|
| T |
10707289 |
atgcaagatttccaaatagcagcagcccatggtaaagaaacagctgctggcttcagaaaattaaaagaaagttacgaagttaatttaccatcggaccagt |
10707388 |
T |
|
| Q |
124 |
gcagccaaacaagagcatcaggcaaaggagcggttggtaaaacca |
168 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| ||||||| |
|
|
| T |
10707389 |
gcagccaaacaagagcatcgggcaaaggggcggttggcaaaacca |
10707433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 24 - 168
Target Start/End: Original strand, 10921059 - 10921203
Alignment:
| Q |
24 |
atgcaagatttccgtatagcagcagcccaaggtaaagaaacagttgctggcttcagaaaattaaaggaaagtttagaagttaatttaccatcggaagagt |
123 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||| ||| |
|
|
| T |
10921059 |
atgcaagatttccaaatagcagcagcccatggtaaagaaacagctgctggcttcagaaaattaaaagaaagttacgaagttaatttaccatcggaccagt |
10921158 |
T |
|
| Q |
124 |
gcagccaaacaagagcatcaggcaaaggagcggttggtaaaacca |
168 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| ||||||| |
|
|
| T |
10921159 |
gcagccaaacaagagcatcgggcaaaggggcggttggcaaaacca |
10921203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 154
Target Start/End: Original strand, 21489025 - 21489164
Alignment:
| Q |
15 |
gaagggggaatgcaagatttccgtatagcagcagcccaaggtaaagaaacagttgctggcttcagaaaattaaaggaaagtttagaagttaatttaccat |
114 |
Q |
| |
|
||||| |||||||||||||||| || ||||||||||| |||||| ||||| || || ||||||||||| | | |||||| |||||||||||||| | |
|
|
| T |
21489025 |
gaaggaggaatgcaagatttccaaattgcagcagcccatggtaaattaacagcagcagggttcagaaaatttagagcaagtttcgaagttaatttaccgt |
21489124 |
T |
|
| Q |
115 |
cggaagagtgcagccaaacaagagcatcaggcaaaggagc |
154 |
Q |
| |
|
| || ||||| ||||| ||||| | ||| ||||||||||| |
|
|
| T |
21489125 |
ccgacgagtggagccagacaagggaatccggcaaaggagc |
21489164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University