View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16013_high_3 (Length: 550)
Name: NF16013_high_3
Description: NF16013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16013_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 5e-79; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 231 - 388
Target Start/End: Complemental strand, 7667254 - 7667097
Alignment:
| Q |
231 |
cgcttgatgggacaattctttcgtgtgatatgtctttaccgctagagtttgatgtggaaaacattatctttctctctacagtttctcttacaccatgatg |
330 |
Q |
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| T |
7667254 |
cgcttgatgggacaattctttcgtgtgatatgtctttaccgctagagtttgatgtggaaaacattatctttctctctacagtttctcttacaccatgatg |
7667155 |
T |
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| Q |
331 |
cttcttatcctttgtgcctgaagaagatgcttttgtatgttgattcggttggctagta |
388 |
Q |
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| T |
7667154 |
cttcttatcctttgtacctgaagaagatgcttttgcatgttgattcggttggctagta |
7667097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 7667466 - 7667312
Alignment:
| Q |
19 |
gattgagccttatttcttatctgattcagagccaacatgcattgttgctcctctattgtcaccagtcagtgctatgacactgaattttttgtcctctata |
118 |
Q |
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| T |
7667466 |
gattgagccttatttcttatctgattcagagccaacatgcattgttgctcctctattgtcaccagtcagtgttatgacactgaattttttgtcctctata |
7667367 |
T |
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| Q |
119 |
ggctgcgttggttgcactgaggctgatattttatgaacaaactttgtaatatcat |
173 |
Q |
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| T |
7667366 |
ggctgtgttggttgcactgaggctgatattttatgaacaaactttgtaatatcat |
7667312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 236 - 388
Target Start/End: Complemental strand, 7087478 - 7087326
Alignment:
| Q |
236 |
gatgggacaattctttcgtgtgatatgtctttaccgctagagtttgatgtggaaaacattatctttctctctacagtttctcttacaccatgatgcttct |
335 |
Q |
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| T |
7087478 |
gatgggacaattctttcgtgtgatatgtctttaccactagagtttgatgtggaaaacattatctttctctctacagtttctcttacaccatgatgcttct |
7087379 |
T |
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| Q |
336 |
tatcctttgtgcctgaagaagatgcttttgtatgttgattcggttggctagta |
388 |
Q |
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| T |
7087378 |
tatcctttgtgcctgaagaagatgctttggtatgttgattcggttggctagta |
7087326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 7087695 - 7087541
Alignment:
| Q |
19 |
gattgagccttatttcttatctgattcagagccaacatgcattgttgctcctctattgtcaccagtcagtgctatgacactgaattttttgtcctctata |
118 |
Q |
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| T |
7087695 |
gattgacccttctttcttatctgattctgaaccaacatgcattgttgctcctctattgtcaccagtcagtgttatgacactgaattttttgtcctccata |
7087596 |
T |
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| Q |
119 |
ggctgcgttggttgcactgaggctgatattttatgaacaaactttgtaatatcat |
173 |
Q |
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| T |
7087595 |
ggttgtgttggttgcactgaggctgatattttatgaacaaactttgtaatatcat |
7087541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 455 - 537
Target Start/End: Complemental strand, 7667030 - 7666948
Alignment:
| Q |
455 |
ggttgaaggtaacttcctttgagtttccaaaggggactttgatgttattttttagattgatatttcctcatctaattttgtct |
537 |
Q |
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| T |
7667030 |
ggttgaaggtaacttcctttgagtttccaaaggggactttgatgttattttttagattgatatttcctcatctaattttgtct |
7666948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 455 - 535
Target Start/End: Complemental strand, 7087259 - 7087180
Alignment:
| Q |
455 |
ggttgaaggtaacttcctttgagtttccaaaggggactttgatgttattttttagattgatatttcctcatctaattttgt |
535 |
Q |
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| T |
7087259 |
ggttgaagg-aacttcctttgagtttccaaatgggactttggtgttagttttgatgttgatatttcctcatctagttttgt |
7087180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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