View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16013_high_7 (Length: 392)

Name: NF16013_high_7
Description: NF16013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16013_high_7
NF16013_high_7
[»] scaffold0008 (1 HSPs)
scaffold0008 (13-337)||(52942-53275)


Alignment Details
Target: scaffold0008 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 337
Target Start/End: Complemental strand, 53275 - 52942
Alignment:
Q  13 aaaatatacgtatctctcgttttattttttataacaaaaatatccacatttcctcctacaatctctctctgagcccaaatcttttcaannnnnnnggtaa 112  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||       |||||    
T  53275 aaaatatacttatctctcgttttattttttgtaacaaaaatatccacatttcctcctagaatctctctctgagcccaaatcttttcaatttttttggtaa 53176  T
Q  113 caaactgagtctttaaaaaacactgagcattgtttgtttcttatacggttgttaagt--tatatatattagagtctcagagttgaaagtgtgttttcatc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||  |||||||||||| ||||||||    
T  53175 caaactgagtctttaaaaaacactgagcattgtttgtttcttatacggttgtttagtgctatatatattagagtctc--agttgaaagtgtattttcatc 53078  T
Q  211 ttttacaggtc-tttttctttcacgtaggtannnnnnnctttcacgttatgtc---acttatca-----tggtatattgtttttctgcttgatttatcgt 301  Q
     |||| ||||| |||||||||||||||||||       |||||||||||||||   ||||||||     |||||||||||||||||||| ||||||||||    
T  53077 gtttataggtcttttttctttcacgtaggtatttttttctttcacgttatgtcactacttatcacttactggtatattgtttttctgctcgatttatcgt 52978  T
Q  302 gagtttcattacaaaccggttatgtgaagaaatcga 337  Q
    ||||||||||||||| || |||||||||||||||||    
T  52977 gagtttcattacaaatcgtttatgtgaagaaatcga 52942  T

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