View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16013_low_1 (Length: 656)
Name: NF16013_low_1
Description: NF16013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16013_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 13 - 429
Target Start/End: Complemental strand, 8192257 - 8191841
Alignment:
| Q |
13 |
cacagagcaaagtggaggaatggttagatctcttcctggttcgttattgaggtatgaaaatgtttttgttgagtttttatttcctttaccccgccgaaaa |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8192257 |
cacagagcaaagtggaggaatggttagatctcttcctggtttgttattgaggtatgaaaatgtttttgttgagtttttttttcctttaccccgccgaaaa |
8192158 |
T |
|
| Q |
113 |
aagtacactgcttcttttattcttaatcatcttgctaatgaacgtcaggagaaattatgctcaacttgatagtaacagcgagagacaattgatacatcat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8192157 |
aagtacactgcttcttttattcttaatcatcttgctaatgaatgtcaggagaaattatgctcaacttgatagtaacagcgagagacaattgatacatcat |
8192058 |
T |
|
| Q |
213 |
cccgtggctgttcccagtggccccactgattggaatgaagcacttgacatgatttcttttggttctcctgaggaggtggatgtcatagcatgacctcttg |
312 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
8192057 |
cccgtggctgttcccagtggccccattgattggaatgaagcacttgacatgatttcttttggttctcctgagcaggtggatgtcatagcatgacctcttg |
8191958 |
T |
|
| Q |
313 |
ttattattataaatatcttcatcataatttgtgggacaataatttatgcattagtcatccacgttgaaaattgacaattctgttcacaaatatagataca |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8191957 |
ttattattataaatatcttcatcataatttgtgggacaataatttatgcattagtcatccacgttgaaaattgacaattctgttcacaaatatagataca |
8191858 |
T |
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| Q |
413 |
tgatacatcattggaga |
429 |
Q |
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| T |
8191857 |
tgatacatcattggaga |
8191841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 455 - 638
Target Start/End: Complemental strand, 8191816 - 8191633
Alignment:
| Q |
455 |
ggaaaatggagcttttacatcagttttcaaaataattttgtgatgcagtctgttgaaggaatgaaagttgtttgccatgagttggctcaggccactgatc |
554 |
Q |
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| T |
8191816 |
ggaaaatggagcttttacatcagttttcaaaataattttgtgatgcagtcggttgaaggaatgaaagttgtttgccatgagttggctcaggccactgatc |
8191717 |
T |
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| Q |
555 |
cagaaggcagtgctatggatgaactcgtgaaggatgcagataggctagtttcatgccttgcaaatgaggcaagatagttttgtc |
638 |
Q |
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| T |
8191716 |
cagaaggcagtgctatggatgaactcgtgaaggacgcagataggctagtttcatgccttgcaaatgaggcaagatagttttgtc |
8191633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 173; Significance: 1e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 15 - 420
Target Start/End: Complemental strand, 42350084 - 42349662
Alignment:
| Q |
15 |
cagagcaaagtggaggaatggttagatctcttcctggttcgttattgaggtatgaaaatgtttttgttgagtttttat-----ttcctttaccccg---- |
105 |
Q |
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||||||||||||||| ||||| |||||||||||||||| ||||||||||||||| |||| || ||||||||||||| | ||| |||||||| |
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| T |
42350084 |
cagagcaaagtggagaaatggctagatctcttcctggtccgttattgaggtatggaaatattgttgttgagtttttttgttccttcttttacccctaaat |
42349985 |
T |
|
| Q |
106 |
-----------ccgaaaaaagtacactgcttcttttattcttaatcatcttgctaatgaacgtcaggagaaattatgctcaacttgatagtaacagcgag |
194 |
Q |
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|| ||||||||||| ||||||| |||||||||||||||||||| || || |||||||||||||||||||||| ||||||||||| ||| |
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| T |
42349984 |
aacaacccccaccaaaaaaagtacaatgcttctattattcttaatcatcttgcttattaatgtcaggagaaattatgctcaacctgatagtaacattgag |
42349885 |
T |
|
| Q |
195 |
agacaattgatacatcatcccgtggctgttcccagtggccccactgattggaatgaagcacttgacatgatttcttttggttctcctgaggaggtggatg |
294 |
Q |
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||||||||||| | || ||| ||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||| |
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| T |
42349884 |
agacaattgatgcctcgtcctgtggctgttgccagtagccccactgattggaatgaagcacttgacattatttctttcggttctcctgagcaggtggatg |
42349785 |
T |
|
| Q |
295 |
tcatagcatgacctcttgttattattataaatatcttcatcataatttgtgggacaataatttatgcattagtcatccacgttgaaaattgacaattctg |
394 |
Q |
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||||||| ||||||| | ||||| | |||||||| || || |||||||||||||||||| |||||||||||||||| |||||||||| ||||||| |
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| T |
42349784 |
acatagca--gcctcttgctgttattttgaatatcttaat-attatttgtgggacaataattcttgcattagtcatccactttgaaaattggcaattctt |
42349688 |
T |
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| Q |
395 |
ttcacaaatatagatacatgatacat |
420 |
Q |
| |
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|||||| ||||||||||||||||||| |
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| T |
42349687 |
ttcacacatatagatacatgatacat |
42349662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 455 - 638
Target Start/End: Complemental strand, 42349626 - 42349439
Alignment:
| Q |
455 |
ggaaaatggagcttttacatcagttttcaaaataattt-tgtgatgcagtctgttgaaggaatgaaagttgtttgccatgagttggctcaggccact--- |
550 |
Q |
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||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
42349626 |
ggaaaatggtgcttttacatctgttttcaaaataatttctgtgatgcagtctgttgaaggaatgaaagttgtctgccatgagttggctcaggcgactagt |
42349527 |
T |
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| Q |
551 |
gatccagaaggcagtgctatggatgaactcgtgaaggatgcagataggctagtttcatgccttgcaaatgaggcaagatagttttgtc |
638 |
Q |
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||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
42349526 |
gatccagaaggcaatgccatggatgaactcgttaaggatgcagataggctagtttcatgccttgcagataaggcaagatagttttgtc |
42349439 |
T |
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