View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16013_low_10 (Length: 326)
Name: NF16013_low_10
Description: NF16013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16013_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 88 - 309
Target Start/End: Original strand, 1407139 - 1407360
Alignment:
| Q |
88 |
atattgaacaataagaatcataaaatttcaattttaaatgttgaaatttcatgttcaaaaacagcagcacatacccttggtaaagcatgataataataat |
187 |
Q |
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| T |
1407139 |
atattgaacaataagagtcataaaatttcaattttaaatgttgaaattttatgttcaaaaacagcagcacatacccttggtaaagcatgataataataat |
1407238 |
T |
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| Q |
188 |
tccaccttatcatgtcaccgtatatattgacaataaccaaaagtgtaaaagtagattgaatataccaccttttatacaatcaaaattctaaaggaaaaag |
287 |
Q |
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| T |
1407239 |
tccaccttatcatgtcaccgtatatattgacaataaccaaaagtgtaaaagtagattgaatataccaccatttatacaatcaaaattctaaaggaaaaag |
1407338 |
T |
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| Q |
288 |
aagaagaaaaataaatagatat |
309 |
Q |
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| T |
1407339 |
aagaagaaaaataaatagatat |
1407360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 1388014 - 1388078
Alignment:
| Q |
18 |
aaaagtcaaccaaattcaaaacacaatataagctgcaggtgtaaacttaattaaaatcatgcaag |
82 |
Q |
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| T |
1388014 |
aaaagtcaaccaaatccaaaacacaatataagctgcaggtgtaaacttaattaaaatcatgcaag |
1388078 |
T |
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