View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16013_low_17 (Length: 260)
Name: NF16013_low_17
Description: NF16013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16013_low_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 10 - 257
Target Start/End: Complemental strand, 31078933 - 31078671
Alignment:
| Q |
10 |
atgaacatcacgatgaatattatgattttggcaaatttggtgtgataccaa--acatattctatacaagataatgagtatgttttgacgttggaactttt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
31078933 |
atgaacatcacgatgaatattatgattttggcaaatttggtgtgataccaattacatattctatacaagataatgagtatgttttgacgttggaaccttt |
31078834 |
T |
|
| Q |
108 |
ggaacatatttatgcaacatttacttttatgagaaatgctaa-------------gaaacattgtaatgtaaaatgtggaaaagttgtatatgtaatttt |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
31078833 |
ggaacatatttatgcaacatttacttttatgagaaatgctaagaaaactaatatagaaacattgtaatgtaaaatgtggaaaagttgtatatttaacttt |
31078734 |
T |
|
| Q |
195 |
ttaaaatcaagaatgtgtggttttcaatgaaattttttcacttttaactttcttaactaatat |
257 |
Q |
| |
|
||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31078733 |
ttaaaattaagaatatgtggtttttaatgaaattttttcacttttaactttcttaactaatat |
31078671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 24123320 - 24123380
Alignment:
| Q |
191 |
ttttttaaaatcaagaatgtgtggttttcaatgaaattttttcacttttaactttcttaac |
251 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||| ||| |||| |||||||||||| ||||| |
|
|
| T |
24123320 |
ttttttaaaatcaagaatttgttgttttcaattaaaattttctacttttaacttttttaac |
24123380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University