View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16013_low_19 (Length: 238)
Name: NF16013_low_19
Description: NF16013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16013_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 216
Target Start/End: Original strand, 15007383 - 15007583
Alignment:
| Q |
16 |
agcaacatgatgtatataagttatatataagtatgtttctgcaatcccttctctgactgttatgatttgcctccatcatcattagttgatgcgttgaaat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15007383 |
agcaacatgatgtatataagttatatataagtatgtttctgcaatcccttctctgactgttatgatttgcctccatcatcattagttgatgcgttgaaat |
15007482 |
T |
|
| Q |
116 |
tcattgtttttatgtactcattagttgttgaattcttgaatgaccatttgttatcaaagttgtgatctctgtattaacagaaatcagtgaccacattagc |
215 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
15007483 |
tcattgtttttatttactcattagttgttgaattcttgaatgaccatttgttatcaaagttgcgatctctgtattaacagaaatcagtgaccacattagc |
15007582 |
T |
|
| Q |
216 |
c |
216 |
Q |
| |
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| |
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| T |
15007583 |
c |
15007583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 216
Target Start/End: Original strand, 40786973 - 40787173
Alignment:
| Q |
16 |
agcaacatgatgtatataagttatatataagtatgtttctgcaatcccttctctgactgttatgatttgcctccatcatcattagttgatgcgttgaaat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40786973 |
agcaacatgatgtatataagttatatataagtatgtttctgcaatcccttctctgactgttatgatttgcctccatcatcattacttgatgcgttgaaat |
40787072 |
T |
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| Q |
116 |
tcattgtttttatgtactcattagttgttgaattcttgaatgaccatttgttatcaaagttgtgatctctgtattaacagaaatcagtgaccacattagc |
215 |
Q |
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| T |
40787073 |
tcattgtttttatttactcattagttgttgaatttttgaatgacgatttgttatcaaagttgtgatctctgtattaacagaaatcagtgaccacattagc |
40787172 |
T |
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| Q |
216 |
c |
216 |
Q |
| |
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| |
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| T |
40787173 |
c |
40787173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 46 - 201
Target Start/End: Complemental strand, 39459630 - 39459473
Alignment:
| Q |
46 |
gtatgtttctgcaatcccttctctgactgttatgatttgcctccatcatcattagttgatgcgttgaaattcattgtttttatgtactcattagttgttg |
145 |
Q |
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||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| || |||||| |||||||||||||||| |
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| T |
39459630 |
gtatgtttctgcagtcccttctctgactgttatgagctgcctccatcatcattagttgatgcgttcaaattcagtgcttttatttactcattagttgttg |
39459531 |
T |
|
| Q |
146 |
aattcttgaatgaccatttgttatcaaagttgtgatc--tctgtattaacagaaatca |
201 |
Q |
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||||| |||||||||||| ||| ||||| |||||| |||||||||||| |||||| |
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| T |
39459530 |
aattcacgaatgaccattttttagcaaagcagtgatctttctgtattaacataaatca |
39459473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 112 - 216
Target Start/End: Complemental strand, 39459258 - 39459158
Alignment:
| Q |
112 |
aaattcattgtttttatgtactcattagttgttgaattcttgaatgaccatttgttatcaaagttgtgatctctgtattaacagaaatcagtgaccacat |
211 |
Q |
| |
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|||| |||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
39459258 |
aaatacattgtttttatttactcattagttgttgtattcttgaatgaccatttgtcatcaaagctgtga----tgtattaacagaaatcagtgaccacat |
39459163 |
T |
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| Q |
212 |
tagcc |
216 |
Q |
| |
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||||| |
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|
| T |
39459162 |
tagcc |
39459158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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