View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16013_low_2 (Length: 591)
Name: NF16013_low_2
Description: NF16013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16013_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 498; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 11 - 572
Target Start/End: Original strand, 10441021 - 10441583
Alignment:
| Q |
11 |
cagagaggagaagaaaagatggtcaacaagtacctccaagtgacaaggtttatgaatgcattcttttccgaggaagtgacattaaggtaactatattatc |
110 |
Q |
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| T |
10441021 |
cagaggggagaagaaaagatggtcaacaagtacctccaagtgacaaggtttatgaatgcattcttttccgaggaagtgacattaaggtaactatattatc |
10441120 |
T |
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| Q |
111 |
attatttaactgatttgcagtctattgttaataagagaaataagcatgtgatgaaatatttctgatttattgctcagaagcatctcaccctgtgtggggg |
210 |
Q |
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| T |
10441121 |
attatttaactgatttgcagactattgttaataagagaaataagcatgtgatgaaatatttctgatttattgctcagaagcatctcaccctgtgtggggg |
10441220 |
T |
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| Q |
211 |
agttaataaggcttggctgatgttgttgtattgctgtgatatatcttagttttgaggttttaaaatatttttataatatatgaatgatttctgattgagg |
310 |
Q |
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| T |
10441221 |
agttaataaggcttggctgatgttgttgtattgctgtgatatatcttagttttgaggttttaaaatatttttataatatatgaatgatttctgattgagg |
10441320 |
T |
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| Q |
311 |
ccttnnnnnnntttgttgtcccttgttcgtttatgcaacttctcactaatcataatcttttacttaatagagtgatttgaatggttttcttgttaagtat |
410 |
Q |
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| T |
10441321 |
ccttaaaaaaatttgttgtcctttgttcgtttatgcaacttttcacaaatcataatcttttacttaatagagtgatgtgtatggttttctagttaagtat |
10441420 |
T |
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| Q |
411 |
tgctcaaattcaggttcttggtgcaactgatgtatttt-ggggcctttgtatattattttccttttacttctacaaaattctcctttttaggttgatcat |
509 |
Q |
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| T |
10441421 |
tgctcaaattcaggttcttggtgcaactgatgtattttgggggcctttgtatattattttccttttacttctacaaaattctcctttttaggttgatcat |
10441520 |
T |
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| Q |
510 |
attctttttaataggtgatttgctttataaaactctcgccaagaagattgattctcatctgtt |
572 |
Q |
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| T |
10441521 |
attctttttaataggtgattttctttataaaactctcgccaagaagattgattctcatctgtt |
10441583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 353 - 519
Target Start/End: Complemental strand, 9993072 - 9992897
Alignment:
| Q |
353 |
tcactaatcataatcttttacttaatagagtgatttgaatggttttcttgttaagtattgctcaaattcaggttcttggtgcaactgatgtattttgggg |
452 |
Q |
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||||||||||||||||||||||||||||| |||| || ||||||||| | || | ||||| ||||||| | |||||||||||||||||| |||||||||| |
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| T |
9993072 |
tcactaatcataatcttttacttaatagattgatgtgtatggttttcattttcaatattggtcaaatttaagttcttggtgcaactgatttattttgggg |
9992973 |
T |
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| Q |
453 |
--cctt---tgtatattattttccttttacttctacaaaattctcct-----ttttaggttgatcatattcttttta |
519 |
Q |
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| T |
9992972 |
gtccttcaatttatattatctttctttttcttttac-aaattctcctttttattttaggttgatcatattcttttta |
9992897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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