View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16013_low_20 (Length: 223)
Name: NF16013_low_20
Description: NF16013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16013_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 22 - 207
Target Start/End: Complemental strand, 6241511 - 6241329
Alignment:
| Q |
22 |
tgcctattcacgaatatttggatataattgtttatttctttcacaatgnnnnnnnatac-ggtaatgattacaacataattaatatgtaattttctttta |
120 |
Q |
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| T |
6241511 |
tgcctattcacgagtatttggatataattgtttatttctttcacaaggtttt----tactggtaatgattacaacataattaatatgtaattttctgtta |
6241416 |
T |
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| Q |
121 |
gaagttgaatgatgacatttattgagagaaagatagtagagaaaatgaggttcagtgatagccaagtaacactattctgtctttctt |
207 |
Q |
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| T |
6241415 |
gaagttgaatgatgacatttattgagagaaagatagtagagaaaatgaggttcagtgatagccaagtaacactattctgtctttctt |
6241329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 28 - 207
Target Start/End: Complemental strand, 6233639 - 6233462
Alignment:
| Q |
28 |
ttcacgaatatttggatataattgtttatttctttcacaatgnnnnnnnatacggtaatgattacaacataattaatatgtaattttcttttagaagttg |
127 |
Q |
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| T |
6233639 |
ttcacgagtatttggatataattgtttatttctttcacaa--gttttttatatggtaatgattataacataattaatatgtaattttctgttagaagttg |
6233542 |
T |
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| Q |
128 |
aatgatgacatttattgagagaaagatagtagagaaaatgaggttcagtgatagccaagtaacactattctgtctttctt |
207 |
Q |
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| T |
6233541 |
aatgatgacatttattgagagaaagatagtagagaaaatgaggttcagtgatagccaagtaacactattctgtctttctt |
6233462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 13283535 - 13283602
Alignment:
| Q |
83 |
taatgattacaacataattaatatgtaattttcttttagaagttgaatgatgacatttattgagagaa |
150 |
Q |
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| T |
13283535 |
taatgattacaacatatttaatatgtaattttatgttagaagttgaatgatgacatttatggagagaa |
13283602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 6233678 - 6233635
Alignment:
| Q |
22 |
tgcctattcacgaatatttggatataattgtttatttctttcac |
65 |
Q |
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| T |
6233678 |
tgcctattcacgagtatttggatataattgtttatttctttcac |
6233635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 141
Target Start/End: Complemental strand, 6914018 - 6913980
Alignment:
| Q |
103 |
atatgtaattttcttttagaagttgaatgatgacattta |
141 |
Q |
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| T |
6914018 |
atatgtaattttctgttagaatttgaatgatgacattta |
6913980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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