View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16013_low_21 (Length: 214)
Name: NF16013_low_21
Description: NF16013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16013_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 8417692 - 8417887
Alignment:
| Q |
1 |
gataacttcaaagccaaaagtgatgaatcagagcaagtagctgcagcagtagcagcaagaccagacatggttgtagcagtgagaataatcatgttgatgg |
100 |
Q |
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| T |
8417692 |
gataacttcaaagccaaaagtgatgaatctgagcaagtagtgggaacagtagcagcaagaccagacatggttgtagcagtgagagtaatcatgttgatgg |
8417791 |
T |
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| Q |
101 |
aattcaagagaagagtgttccaattgttacgttgttcacaaataatgttgtgatgcatttcaattctgtcagaaacaacttccaagactgcatattatt |
199 |
Q |
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| T |
8417792 |
aattcaagagaagagtgttccaattgttacgtagttcaca---aatgttgtgatgcatttcaattctgtcagaaacaacttccaagactgcatattatt |
8417887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 8375529 - 8375338
Alignment:
| Q |
1 |
gataacttcaaagccaaaagtgatgaatcagagcaagtagctgcagcagtagcagcaagaccagacatggttgtagcagtgagaataatcatgttgatgg |
100 |
Q |
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| T |
8375529 |
gataacttcaaagccaaaagtgatgaatcagagcaagtagctgcagcagtagcagcaacaccagacatggttgtagcagtaagagtaatcatgttgatgg |
8375430 |
T |
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| Q |
101 |
aattcaagagaagagtgttccaattgttacgttgttcacaaataatgttgtgatgcatttcaattctgtcagaaacaacttccaagactgcatat |
195 |
Q |
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| T |
8375429 |
agttcaagagaagagtgttccaattgttacgctgttcgc---caatgttttgatgcatttcaactctatcagaaactgcttccaagattgcatat |
8375338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 8439574 - 8439765
Alignment:
| Q |
1 |
gataacttcaaagccaaaagtgatgaatcagagcaagtagctgcagcagtagcagcaagaccagacatggttgtagcagtgagaataatcatgttgatgg |
100 |
Q |
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| T |
8439574 |
gataacttcaaagccaaaagtgatgaatcagagcaagtagctgcagcagtagcagcaacaccagacatggttgtagcagtaagagtaatcatgttgatgg |
8439673 |
T |
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| Q |
101 |
aattcaagagaagagtgttccaattgttacgttgttcacaaataatgttgtgatgcatttcaattctgtcagaaacaacttccaagactgcatat |
195 |
Q |
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| T |
8439674 |
agttcaagagaagagtgttccaattgctacgctgttcgc---caatgttttgatgcatttcaactctatcagaaactgcttccaagattgcatat |
8439765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 55 - 194
Target Start/End: Complemental strand, 8394924 - 8394788
Alignment:
| Q |
55 |
gcaagaccagacatggttgtagcagtgagaataatcatgttgatggaattcaagagaagagtgttccaattgttacgttgttcacaaataatgttgtgat |
154 |
Q |
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|||| ||||||||||||||||||||||||| ||||||| || || || || || |||||| | ||||| |||||||||||||| | ||||||||||| |
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| T |
8394924 |
gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgc---caatgttgtgat |
8394828 |
T |
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| Q |
155 |
gcatttcaattctgtcagaaacaacttccaagactgcata |
194 |
Q |
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| T |
8394827 |
gcatttctattctgtctgatacagcttccaagactgcata |
8394788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 55 - 194
Target Start/End: Original strand, 8406405 - 8406541
Alignment:
| Q |
55 |
gcaagaccagacatggttgtagcagtgagaataatcatgttgatggaattcaagagaagagtgttccaattgttacgttgttcacaaataatgttgtgat |
154 |
Q |
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| T |
8406405 |
gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgc---caatgttgtgat |
8406501 |
T |
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| Q |
155 |
gcatttcaattctgtcagaaacaacttccaagactgcata |
194 |
Q |
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| T |
8406502 |
gcatttctattctgtctgatacagcttccaagactgcata |
8406541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 55 - 194
Target Start/End: Original strand, 8412525 - 8412661
Alignment:
| Q |
55 |
gcaagaccagacatggttgtagcagtgagaataatcatgttgatggaattcaagagaagagtgttccaattgttacgttgttcacaaataatgttgtgat |
154 |
Q |
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|||| ||||||||||||||||||||||||| ||||||| || || || || || |||||| | ||||| |||||||||||||| | ||||||||||| |
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| T |
8412525 |
gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgc---caatgttgtgat |
8412621 |
T |
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| Q |
155 |
gcatttcaattctgtcagaaacaacttccaagactgcata |
194 |
Q |
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| T |
8412622 |
gcatttctattctgtctgatacagcttccaagactgcata |
8412661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 55 - 194
Target Start/End: Original strand, 8434623 - 8434759
Alignment:
| Q |
55 |
gcaagaccagacatggttgtagcagtgagaataatcatgttgatggaattcaagagaagagtgttccaattgttacgttgttcacaaataatgttgtgat |
154 |
Q |
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|||| ||||||||||||||||||||||||| ||||||| || || || || || |||||| | ||||| |||||||||||||| | ||||||||||| |
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| T |
8434623 |
gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgc---caatgttgtgat |
8434719 |
T |
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| Q |
155 |
gcatttcaattctgtcagaaacaacttccaagactgcata |
194 |
Q |
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| T |
8434720 |
gcatttctattctgtctgatacagcttccaagactgcata |
8434759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 61 - 194
Target Start/End: Complemental strand, 8395161 - 8395031
Alignment:
| Q |
61 |
ccagacatggttgtagcagtgagaataatcatgttgatggaattcaagagaagagtgttccaattgttacgttgttcacaaataatgttgtgatgcattt |
160 |
Q |
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|||||||||||||||||||||||| ||||||| || || || || || |||||| | ||||| |||||||||||||| | ||||||||||||||||| |
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| T |
8395161 |
ccagacatggttgtagcagtgagagtaatcatttttattgagtttaatagaagattattccagttgttacgttgttcgc---caatgttgtgatgcattt |
8395065 |
T |
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| Q |
161 |
caattctgtcagaaacaacttccaagactgcata |
194 |
Q |
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| T |
8395064 |
ctattctgtctgatacagcttccaagactgcata |
8395031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 133
Target Start/End: Original strand, 8431553 - 8431631
Alignment:
| Q |
55 |
gcaagaccagacatggttgtagcagtgagaataatcatgttgatggaattcaagagaagagtgttccaattgttacgtt |
133 |
Q |
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| T |
8431553 |
gcaacaccagacatagtcttagcagtgagagtaatcatgtttattgagttcaaaagaagattattccagttgttacgtt |
8431631 |
T |
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