View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16013_low_23 (Length: 209)
Name: NF16013_low_23
Description: NF16013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16013_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 31078450 - 31078256
Alignment:
| Q |
1 |
ccctcggcccagcttgaaaaaccgcataactataaggatccatcccaataaaactccacttcccatcctcatcttgactcaaccacctctccggtcgaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31078450 |
ccctcggcccagcttgaaaaaccgcataactataaggatccatcccaataaaactccacttcccatcctcatcttgactcaaccacctctccggtcgaaa |
31078351 |
T |
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| Q |
101 |
ctcagcccaatcaagtccccatattttctctgaccttcccatagcatatatatgatacgccactctccaccctttcttcacaaaagttccatctg |
195 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31078350 |
ctcagcccaatcaagtccccatattttctccgaccttcccatagcatatatatgatacgccactctccaccctttcttcacaaaagttccatctg |
31078256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 31127768 - 31127576
Alignment:
| Q |
1 |
ccctcggcccagcttgaaaaaccgcataactataaggatccatcccaataaaactccacttcccatcctcatcttgactcaaccacctctccggtcgaaa |
100 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||| ||||||||||||| ||||| |||||||| |
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| T |
31127768 |
cccttggcccagcctgaaaaaccgcataactataaggatccatcccaataaagctccactttccatcatcaacttgactcaaccatctctcaggtcgaaa |
31127669 |
T |
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| Q |
101 |
ctcagcccaatcaagtccccatattttctctgaccttcccatagcatatatatgatacgccactctccaccctttcttcacaaaagttccatc |
193 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||||||||||||||||| | ||| ||||||||||||||||| ||||||||||| |
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| T |
31127668 |
ctcagcccaatcgggtccccatattttctcggaccttcccatagcatatatatgatatgtcaccctccaccctttcttcactaaagttccatc |
31127576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 31132476 - 31132282
Alignment:
| Q |
1 |
ccctcggcccagcttgaaaaaccgcataactataaggatccatcccaataaaactccacttcccatcctcatcttgactcaaccacctctccggtcgaaa |
100 |
Q |
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|
||||||||||||||||||||| || |||| |||||||||||||||||| ||| ||||| || ||||| ||| || |||||||||||||||| |||| ||| |
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| T |
31132476 |
ccctcggcccagcttgaaaaatcggataagtataaggatccatcccaacaaagctccattttccatcgtcagctcgactcaaccacctctcaggtcaaaa |
31132377 |
T |
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| Q |
101 |
ctcagcccaatcaagtccccatattttctctgaccttcccatagcatatatatgatacgccactctccaccctttcttcacaaaagttccatctg |
195 |
Q |
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|||||||||||| ||||||||||||||| |||||||||||| |||||| ||||||||| ||| |||||||||||||||| || |||||||||| |
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| T |
31132376 |
ctcagcccaatcggatccccatattttctcagaccttcccataacatatacatgatacgcaactatccaccctttcttcactaatgttccatctg |
31132282 |
T |
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