View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16013_low_4 (Length: 456)
Name: NF16013_low_4
Description: NF16013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16013_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Original strand, 22657114 - 22657541
Alignment:
| Q |
18 |
cctgtgtggtagcgtttggagccgatcaattcgatgaatcagatccaaaccaaaacacaaggacatggacttattttaattggtactattttgtcatggg |
117 |
Q |
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| T |
22657114 |
cctgtgtggtagcgtttggagccgatcaattcgatgaatcggatccaaaccaaaaaacaaggacatggacttattttaattggtactattttgtcatggg |
22657213 |
T |
|
| Q |
118 |
aacagctatacttgtggctgtgactgttctagtttatattcaagacaatgttggatggggatggggccttggaatccccacattggcaatgtttatctca |
217 |
Q |
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| T |
22657214 |
aacagctatacttgtggctgtgactgttctagtttatattcaagacaatgttggatggggatggggccttggaatccccacattggcaatgtttatctca |
22657313 |
T |
|
| Q |
218 |
ataattgcattcattggtggatatccactttaccggaacttgaacccggaaggaagcccgtttacccgacttgtgaaagtgggtgtggctgcttttcgta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22657314 |
ataattgcattcattggtggatatccactttaccggaacttgaacccggaaggaagcccgtttacccgacttgtgaaagtgggtgtggctgcttttcgta |
22657413 |
T |
|
| Q |
318 |
aaaggaagatacctaaagtgcctaactctacattgttataccaaaatgatgaacttgatgcatcaataacattaggagggaagctgcttcattctgatca |
417 |
Q |
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| T |
22657414 |
agaggaagatacctaaagtgcctaactctacattgttataccaaaatgatgaacttgatgcatcaataacattaggtgggaagctgcttcattcagatca |
22657513 |
T |
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| Q |
418 |
gttaaagtaagtatactaacttattcat |
445 |
Q |
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||||||||||||||| ||||| |||||| |
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| T |
22657514 |
gttaaagtaagtatattaactgattcat |
22657541 |
T |
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