View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16013_low_6 (Length: 405)
Name: NF16013_low_6
Description: NF16013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16013_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 364; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 10 - 389
Target Start/End: Original strand, 31009203 - 31009582
Alignment:
| Q |
10 |
catcatcatcaacatctttctcttcctctcactcttcttcttaatcccaatacatgtcaatagtgatggtgaaagctacaaatcttgtgcaccttttaga |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31009203 |
catcatcatcaacatctttctcttcctctcactcttcttcttaatcccaatacatgtcaatagtgacggtgaaagctacaaatcttgtgcaccttttaga |
31009302 |
T |
|
| Q |
110 |
tgtggagatttcaccaacattagttacccattttggagtactaacaaccatcaaaattattgtggtcatccaaacttcggagttgattgtgaacatggca |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31009303 |
tgtggagatttcaccaacattagttacccattttggagtattaacaaccatcaaaattattgtggtcatccaaacttcggagttgattgtgaacatggca |
31009402 |
T |
|
| Q |
210 |
acttgactattgaaatcaagtcacaaaagtttcacatcattgatataaatcaaacttcacaagttttgaggattgcaaggttggatttatggagttatga |
309 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31009403 |
acttgactattgaaatcaagtcacaaaagtttcacatcattgatataaatcaaacttcacaagttttgaggattgcaaggttggatttatggagttatga |
31009502 |
T |
|
| Q |
310 |
ttctgctactattgcttcttgtcccaagaaatatatcaatgtaatcctagattcggaattcttcaactacacttccaatt |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
31009503 |
ttctgctactattgcttcttgtcccaagaaatatatcaatgtaaccctagattcggaattcttcaattacacttccaatt |
31009582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 12 - 389
Target Start/End: Original strand, 30983323 - 30983697
Alignment:
| Q |
12 |
tcatcatcaacatctttctcttcctctcactcttcttcttaatcccaatacatgtcaatagtgatggtgaaagctacaaatcttgtgcaccttttagatg |
111 |
Q |
| |
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||||||||||||||| |||||| |||||||||||||| ||| ||||||||||||| |||||||| |||||||| ||||||||||||||||||||| || |
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| T |
30983323 |
tcatcatcaacatctgtctcttactctcactcttctt---aattccaatacatgtcactagtgatgttgaaagcttcaaatcttgtgcaccttttagttg |
30983419 |
T |
|
| Q |
112 |
tggagatttcaccaacattagttacccattttggagtactaacaaccatcaaaattattgtggtcatccaaacttcggagttgattgtgaacatggcaac |
211 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
30983420 |
tggaaatttcaccaatattagttacccattttggagtattaacaaccaacaaaattattgtggtcatccaaacttcaaacttgattgtgaacatggcaac |
30983519 |
T |
|
| Q |
212 |
ttgactattgaaatcaagtcacaaaagtttcacatcattgatataaatcaaacttcacaagttttgaggattgcaaggttggatttatggagttatgatt |
311 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30983520 |
ttgactattgaaattaagtcacaaaagtttcacatcattgatataaatcaaacttcacaagttttgaggattgcaaggttggatttatggagttatgatt |
30983619 |
T |
|
| Q |
312 |
ctgctactattgcttcttgtcccaagaaatatatcaatgtaatcctagattcggaattcttcaactacacttccaatt |
389 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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|
| T |
30983620 |
ctgctactattgcttcttgtcccaagaaatatatcaatgtaaccctagattcggaattcttcaattacacttccaatt |
30983697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 12 - 389
Target Start/End: Original strand, 30989487 - 30989861
Alignment:
| Q |
12 |
tcatcatcaacatctttctcttcctctcactcttcttcttaatcccaatacatgtcaatagtgatggtgaaagctacaaatcttgtgcaccttttagatg |
111 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||| ||| ||||||||||||| |||||||| |||||||| ||||||||||||||||||||| || |
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|
| T |
30989487 |
tcatcatcaacatctgtctcttactctcactcttctt---aattccaatacatgtcactagtgatgttgaaagcttcaaatcttgtgcaccttttagttg |
30989583 |
T |
|
| Q |
112 |
tggagatttcaccaacattagttacccattttggagtactaacaaccatcaaaattattgtggtcatccaaacttcggagttgattgtgaacatggcaac |
211 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| |
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|
| T |
30989584 |
tggaaatttcaccaatattagttacccattttggagtattaacaaccaacaaaattattgtggtcatccaaacttcaaacttgattgtgaacatggcaac |
30989683 |
T |
|
| Q |
212 |
ttgactattgaaatcaagtcacaaaagtttcacatcattgatataaatcaaacttcacaagttttgaggattgcaaggttggatttatggagttatgatt |
311 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30989684 |
ttgactattgaaattaagtcacaaaagtttcacatcattgatataaatcaaacttcacaagttttgaggattgcaaggttggatttatggagttatgatt |
30989783 |
T |
|
| Q |
312 |
ctgctactattgcttcttgtcccaagaaatatatcaatgtaatcctagattcggaattcttcaactacacttccaatt |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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|
| T |
30989784 |
ctgctactattgcttcttgtcccaagaaatatatcaatgtaaccctagattcggaattcttcaattacacttccaatt |
30989861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 12 - 387
Target Start/End: Original strand, 30941427 - 30941799
Alignment:
| Q |
12 |
tcatcatcaacatctttctcttcctctcactcttcttcttaatcccaatacatgtcaatagtgatggtgaaagctacaaatcttgtgcaccttttagatg |
111 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| | ||||||||||||| ||| |||||| | |||||||| ||||||||||||||||||||| || |
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|
| T |
30941427 |
tcatcatcaacatctttctcttccttgcactcttcat---aatcccaatacatatcactagtgacgttgaaagcttcaaatcttgtgcaccttttagttg |
30941523 |
T |
|
| Q |
112 |
tggagatttcaccaacattagttacccattttggagtactaacaaccatcaaaattattgtggtcatccaaacttcggagttgattgtgaacatggcaac |
211 |
Q |
| |
|
|||| ||||||||||| ||||||| |||||||||||| ||||||||| | || ||||||||| || ||||||||| |||||||||||||||||||| |
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|
| T |
30941524 |
tggaaatttcaccaacgttagttatccattttggagtgttaacaaccaaccaagttattgtggccacccaaacttcaaccttgattgtgaacatggcaac |
30941623 |
T |
|
| Q |
212 |
ttgactattgaaatcaagtcacaaaagtttcacatcattgatataaatcaaacttcacaagttttgaggattgcaaggttggatttatggagttatgatt |
311 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| || | | ||||||||||||| ||||||||||||||||| ||||| |
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|
| T |
30941624 |
ttgactattgagatcaagtcacaaaagtttcacatcattgatataaatcaaacatctcgacttttgaggattgcccggttggatttatggagtaatgatg |
30941723 |
T |
|
| Q |
312 |
ctgctactattgcttcttgtcccaagaaatatatcaatgtaatcctagattcggaattcttcaactacacttccaa |
387 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||| |||||||||||||||||||| |
|
|
| T |
30941724 |
ctgctactattgtttcttgtcccaagaaatatatcattgtaaacctagatttggatttcttcaactacacttccaa |
30941799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 12 - 225
Target Start/End: Original strand, 30976884 - 30977094
Alignment:
| Q |
12 |
tcatcatcaacatctttctcttcctctcactcttcttcttaatcccaatacatgtcaatagtgatggtgaaagctacaaatcttgtgcaccttttagatg |
111 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||| ||| ||||||||||||| |||||||| |||||||| ||||||||||||||||||||| || |
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|
| T |
30976884 |
tcatcatcaacatctgtctcttactctcactcttctt---aattccaatacatgtcactagtgatgttgaaagcttcaaatcttgtgcaccttttagttg |
30976980 |
T |
|
| Q |
112 |
tggagatttcaccaacattagttacccattttggagtactaacaaccatcaaaattattgtggtcatccaaacttcggagttgattgtgaacatggcaac |
211 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| |
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|
| T |
30976981 |
tggaaatttcaccaatattagttacccattttggagtattaacaaccaacaaaattattgtggtcatccaaacttcaaacttgattgtgaacatggcaac |
30977080 |
T |
|
| Q |
212 |
ttgactattgaaat |
225 |
Q |
| |
|
|||||||||||||| |
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|
| T |
30977081 |
ttgactattgaaat |
30977094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 278
Target Start/End: Original strand, 49094044 - 49094101
Alignment:
| Q |
221 |
gaaatcaagtcacaaaagtttcacatcattgatataaatcaaacttcacaagttttga |
278 |
Q |
| |
|
||||||||||| ||||||||||||||| |||| || |||||||| || ||| |||||| |
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|
| T |
49094044 |
gaaatcaagtcccaaaagtttcacatccttgagattaatcaaacatctcaaattttga |
49094101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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