View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16013_low_7 (Length: 392)

Name: NF16013_low_7
Description: NF16013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16013_low_7
NF16013_low_7
[»] scaffold0008 (1 HSPs)
scaffold0008 (13-337)||(52942-53275)


Alignment Details
Target: scaffold0008 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 337
Target Start/End: Complemental strand, 53275 - 52942
Alignment:
Q  13 aaaatatacgtatctctcgttttattttttataacaaaaatatccacatttcctcctacaatctctctctgagcccaaatcttttcaannnnnnnggtaa 112  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||       |||||    
T  53275 aaaatatacttatctctcgttttattttttgtaacaaaaatatccacatttcctcctagaatctctctctgagcccaaatcttttcaatttttttggtaa 53176  T
Q  113 caaactgagtctttaaaaaacactgagcattgtttgtttcttatacggttgttaagt--tatatatattagagtctcagagttgaaagtgtgttttcatc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||  |||||||||||| ||||||||    
T  53175 caaactgagtctttaaaaaacactgagcattgtttgtttcttatacggttgtttagtgctatatatattagagtctc--agttgaaagtgtattttcatc 53078  T
Q  211 ttttacaggtc-tttttctttcacgtaggtannnnnnnctttcacgttatgtc---acttatca-----tggtatattgtttttctgcttgatttatcgt 301  Q
     |||| ||||| |||||||||||||||||||       |||||||||||||||   ||||||||     |||||||||||||||||||| ||||||||||    
T  53077 gtttataggtcttttttctttcacgtaggtatttttttctttcacgttatgtcactacttatcacttactggtatattgtttttctgctcgatttatcgt 52978  T
Q  302 gagtttcattacaaaccggttatgtgaagaaatcga 337  Q
    ||||||||||||||| || |||||||||||||||||    
T  52977 gagtttcattacaaatcgtttatgtgaagaaatcga 52942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University