View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16013_low_8 (Length: 358)
Name: NF16013_low_8
Description: NF16013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16013_low_8 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 358
Target Start/End: Original strand, 31008886 - 31009226
Alignment:
| Q |
18 |
gaaccatcaacgtgaaaactctcatataagagtttttaacattgcgacaaattcaaattattagtgttaacttgtcatctcgatctcattcaaagatgta |
117 |
Q |
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| T |
31008886 |
gaaccatcaacgtgaaaactctcatataagagtttttaacattgcgacaaattcaaattattagtgttaacttgtcatctcgatctcattcaaagatgta |
31008985 |
T |
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| Q |
118 |
ttgagtcaaattaatttttattaagataacaaacaagttgttatacttatatatatcattttcttttgacttttatatataggacgttgtcatattttga |
217 |
Q |
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| T |
31008986 |
ttgagtcaaattaatttttattaagataacaaacaagttgttatacttatatatatcattttcttttgacttttatatataggacgttgtcatattttga |
31009085 |
T |
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| Q |
218 |
taatttgcctcctcaagaaggcctaacataatttcatcttctaattctatcattagatgcttttaaattttcatcacctccacaaatgcctccacctctt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31009086 |
taatttgcctcctcaagaaggcctaacataatttcatcttctaattctatcattagatgcttttaaattttcatcacctccacaaatgcctccacctctt |
31009185 |
T |
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| Q |
318 |
cttattcttccttgttccatcatcatcaacatctttctctt |
358 |
Q |
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| T |
31009186 |
cttattcttcattgttccatcatcatcaacatctttctctt |
31009226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 358
Target Start/End: Original strand, 30941375 - 30941448
Alignment:
| Q |
285 |
ttttcatcacctccacaaatgcctccacctcttcttattcttccttgttccatcatcatcaacatctttctctt |
358 |
Q |
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| T |
30941375 |
ttttcatcacatccacaaatgcctccccctcttcatcttcaggctttttccttcatcatcaacatctttctctt |
30941448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 358
Target Start/End: Original strand, 30976805 - 30976905
Alignment:
| Q |
260 |
aattctatcattagatgcttttaaattttca--tcacctccacaaatgcctccacctcttcttattcttccttgttccatcatcatcaacatctttctct |
357 |
Q |
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|||||||| ||||||||||||| |||||||| |||| |||||||||||| | |||| || | || | |||| |||| ||||||||||||||| ||||| |
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| T |
30976805 |
aattctataattagatgcttttcaattttcatgtcacatccacaaatgccctcccctcatcatcttttgcctttttccttcatcatcaacatctgtctct |
30976904 |
T |
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| Q |
358 |
t |
358 |
Q |
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| T |
30976905 |
t |
30976905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 358
Target Start/End: Original strand, 30983244 - 30983344
Alignment:
| Q |
260 |
aattctatcattagatgcttttaaattttca--tcacctccacaaatgcctccacctcttcttattcttccttgttccatcatcatcaacatctttctct |
357 |
Q |
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|||||||| ||||||||||||| |||||||| |||| |||||||||||| | |||| || | || | |||| |||| ||||||||||||||| ||||| |
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| T |
30983244 |
aattctataattagatgcttttcaattttcatgtcacatccacaaatgccctcccctcatcatcttttgcctttttccttcatcatcaacatctgtctct |
30983343 |
T |
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| Q |
358 |
t |
358 |
Q |
| |
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| T |
30983344 |
t |
30983344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 358
Target Start/End: Original strand, 30989408 - 30989508
Alignment:
| Q |
260 |
aattctatcattagatgcttttaaattttca--tcacctccacaaatgcctccacctcttcttattcttccttgttccatcatcatcaacatctttctct |
357 |
Q |
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|||||||| ||||||||||||| |||||||| |||| |||||||||||| | |||| || | || | |||| |||| ||||||||||||||| ||||| |
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| T |
30989408 |
aattctataattagatgcttttcaattttcatgtcacatccacaaatgccctcccctcatcatcttttgcctttttccttcatcatcaacatctgtctct |
30989507 |
T |
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| Q |
358 |
t |
358 |
Q |
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| T |
30989508 |
t |
30989508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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