View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16013_low_9 (Length: 334)

Name: NF16013_low_9
Description: NF16013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16013_low_9
NF16013_low_9
[»] chr6 (3 HSPs)
chr6 (17-283)||(33010394-33010650)
chr6 (98-139)||(4749414-4749455)
chr6 (96-152)||(27434752-27434808)
[»] scaffold0022 (2 HSPs)
scaffold0022 (88-219)||(101072-101204)
scaffold0022 (19-55)||(101351-101387)
[»] chr4 (6 HSPs)
chr4 (88-219)||(24091-24223)
chr4 (113-219)||(13914737-13914844)
chr4 (88-135)||(14288161-14288208)
chr4 (88-130)||(13914751-13914793)
chr4 (19-55)||(13914561-13914597)
chr4 (96-152)||(18066749-18066805)
[»] scaffold0289 (1 HSPs)
scaffold0289 (88-219)||(22132-22264)
[»] chr8 (26 HSPs)
chr8 (88-219)||(10895839-10895971)
chr8 (88-219)||(287297-287429)
chr8 (176-220)||(15605885-15605929)
chr8 (176-220)||(15614238-15614282)
chr8 (177-218)||(15624450-15624491)
chr8 (177-220)||(15637226-15637269)
chr8 (177-219)||(15605704-15605746)
chr8 (182-220)||(15637048-15637086)
chr8 (177-218)||(15648238-15648279)
chr8 (88-136)||(12167193-12167241)
chr8 (88-136)||(12411621-12411669)
chr8 (177-217)||(15637777-15637817)
chr8 (95-139)||(16291972-16292016)
chr8 (88-192)||(25113411-25113517)
chr8 (177-220)||(15637409-15637452)
chr8 (88-139)||(17895037-17895088)
chr8 (177-219)||(15605385-15605427)
chr8 (177-219)||(15613738-15613780)
chr8 (177-215)||(15613911-15613949)
chr8 (114-195)||(40267360-40267442)
chr8 (177-218)||(15606069-15606110)
chr8 (177-218)||(15614422-15614463)
chr8 (177-218)||(15637593-15637634)
chr8 (19-55)||(287582-287618)
chr8 (177-209)||(15624095-15624127)
chr8 (177-209)||(15647883-15647915)
[»] scaffold0018 (1 HSPs)
scaffold0018 (88-172)||(67256-67340)
[»] chr3 (7 HSPs)
chr3 (95-195)||(6440879-6440980)
chr3 (88-219)||(9270763-9270891)
chr3 (88-139)||(6445181-6445232)
chr3 (177-219)||(2766128-2766170)
chr3 (88-152)||(20919306-20919370)
chr3 (88-152)||(20928268-20928332)
chr3 (88-152)||(37197867-37197931)
[»] chr1 (6 HSPs)
chr1 (95-218)||(3832141-3832266)
chr1 (88-219)||(3417283-3417414)
chr1 (113-219)||(8314021-8314128)
chr1 (98-219)||(11440796-11440916)
chr1 (88-139)||(8314035-8314086)
chr1 (88-219)||(46514343-46514475)
[»] chr2 (3 HSPs)
chr2 (88-152)||(45049537-45049601)
chr2 (88-136)||(5243273-5243321)
chr2 (19-55)||(45049755-45049791)
[»] chr7 (1 HSPs)
chr7 (177-219)||(7946588-7946630)
[»] chr5 (3 HSPs)
chr5 (88-149)||(19205915-19205976)
chr5 (95-136)||(29857750-29857791)
chr5 (19-55)||(19205728-19205764)
[»] scaffold0191 (1 HSPs)
scaffold0191 (102-188)||(17054-17139)
[»] scaffold0003 (1 HSPs)
scaffold0003 (96-152)||(52555-52611)


Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 283
Target Start/End: Complemental strand, 33010650 - 33010394
Alignment:
Q  17 agataaaaagtaatataagaatatgaaatgttaaacaaaatatataaaacgtactcgtgagcttagctcagttggctgatgaaaaataaatgagttatga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  33010650 agataaaaagtaatataagaatatgaaatgttaaacaaaatata--aaacgtactcgtgagcttagctcagttggctgatgaaaaataaataagtcatga 33010553  T
Q  117 tctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtgaaaaacattaaatgagatgagcaatatgaagatgtcacgtg 216  Q
    ||||||||||||  |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||       
T  33010552 tctattttgattaactaataaaatataattgaatcaacatcaattttaattggttggtgaaaaacattaaatgagatgagcaatatgaagatgtcac--- 33010456  T
Q  217 tacaggtgtacagtgtactgttgatttttaggaagctatttgtttattataatagagatagagatag 283  Q
         |||| || |||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  33010455 -----gtgtccaatgtactgttgatttttaggaagccgtttgtttattataatagagatagagatag 33010394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 4749455 - 4749414
Alignment:
Q  98 aaaaataaatgagttatgatctattttgattggctaataaaa 139  Q
    |||||||||||||| ||||||| |||||||||||||| ||||    
T  4749455 aaaaataaatgagtcatgatctcttttgattggctaagaaaa 4749414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 152
Target Start/End: Complemental strand, 27434808 - 27434752
Alignment:
Q  96 tgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtca 152  Q
    |||||| ||||||||| ||| || || ||||||||||||||||| |||| |||||||    
T  27434808 tgaaaactaaatgagtcatggtccatcttgattggctaataaaaaataaatgagtca 27434752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 88 - 219
Target Start/End: Complemental strand, 101204 - 101072
Alignment:
Q  88 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtgaaaaa-cattaa 186  Q
    |||||| ||||||||||||||||| |||||| |||||||||||||||||||| |||| |||||||  ||| ||||| ||| |||| ||||||| ||||||    
T  101204 ttggcttatgaaaaataaatgagtcatgatccattttgattggctaataaaaaataaatgagtcatgatctattttgattggttgatgaaaaagcattaa 101105  T
Q  187 atgagatgagcaatatgaagatgtcacgtgtac 219  Q
    |||||| ||  ||| |||||||| || ||||||    
T  101104 atgagaagaaaaatttgaagatgccatgtgtac 101072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 101387 - 101351
Alignment:
Q  19 ataaaaagtaatataagaatatgaaatgttaaacaaa 55  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  101387 ataaaaagtaatataagaataagaaatgttaatcaaa 101351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 88 - 219
Target Start/End: Original strand, 24091 - 24223
Alignment:
Q  88 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtgaaaaa-cattaa 186  Q
    |||||| ||||||||||||||||| || ||| |||||||||||||||||||| |||| |||||||  ||| ||||| ||| |||| ||||||| ||||||    
T  24091 ttggctaatgaaaaataaatgagtcattatccattttgattggctaataaaaaataaatgagtcatgatctattttgattggttgatgaaaaatcattaa 24190  T
Q  187 atgagatgagcaatatgaagatgtcacgtgtac 219  Q
    |||||| ||| ||| |||||||| || ||||||    
T  24191 atgagaagagaaatttgaagatgccatgtgtac 24223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 219
Target Start/End: Original strand, 13914737 - 13914844
Alignment:
Q  113 atgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtgaaaaa-cattaaatgagatgagcaatatgaagatgtc 211  Q
    |||||| |||||||||||||||||||| |||| |||||||  ||| ||||| ||| |||| ||||||| |||||||||||| ||  ||| |||||||| |    
T  13914737 atgatcaattttgattggctaataaaaaataaatgagtcatgatctattttgattggttgatgaaaaagcattaaatgagaagataaatttgaagatgcc 13914836  T
Q  212 acgtgtac 219  Q
    | ||||||    
T  13914837 atgtgtac 13914844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 135
Target Start/End: Original strand, 14288161 - 14288208
Alignment:
Q  88 ttggctgatgaaaaataaatgagttatgatctattttgattggctaat 135  Q
    |||||| ||||||||||||||||| |||||  ||||||||||||||||    
T  14288161 ttggctaatgaaaaataaatgagtcatgattcattttgattggctaat 14288208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 130
Target Start/End: Original strand, 13914751 - 13914793
Alignment:
Q  88 ttggctgatgaaaaataaatgagttatgatctattttgattgg 130  Q
    |||||| || |||||||||||||| ||||||||||||||||||    
T  13914751 ttggctaataaaaaataaatgagtcatgatctattttgattgg 13914793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 13914561 - 13914597
Alignment:
Q  19 ataaaaagtaatataagaatatgaaatgttaaacaaa 55  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  13914561 ataaaaagtaatataagaataagaaatgttaatcaaa 13914597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 18066749 - 18066805
Alignment:
Q  96 tgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtca 152  Q
    |||||| ||||||||| ||| || || ||||||||||||||||| |||| |||||||    
T  18066749 tgaaaactaaatgagtcatggtccatcttgattggctaataaaaaataaatgagtca 18066805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 219
Target Start/End: Original strand, 22132 - 22264
Alignment:
Q  88 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtgaaaaa-cattaa 186  Q
    |||||| ||||||||||||||||| ||||| ||||||||||| | ||||||| |||| |||||||  ||  ||||| ||| |||| ||||||| ||||||    
T  22132 ttggctaatgaaaaataaatgagtcatgatttattttgattgacaaataaaaaataaatgagtcatgatatattttgattggttgatgaaaaagcattaa 22231  T
Q  187 atgagatgagcaatatgaagatgtcacgtgtac 219  Q
    |||||||||| |||  |||||||||| ||||||    
T  22232 atgagatgagaaattagaagatgtcatgtgtac 22264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 219
Target Start/End: Complemental strand, 10895971 - 10895839
Alignment:
Q  88 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggt-gaaaaacattaa 186  Q
    |||||| ||||||||||||||||| |||||| |||||||||| ||||||||| |||| |||||||  ||| || || ||| |||| |  |||||||||||    
T  10895971 ttggctaatgaaaaataaatgagtcatgatccattttgattgactaataaaaaataaatgagtcatgatccatattgattggttgataaaaaaacattaa 10895872  T
Q  187 atgagatgagcaatatgaagatgtcacgtgtac 219  Q
    |||||||||| ||| |||||||| || ||||||    
T  10895871 atgagatgagaaatttgaagatggcatgtgtac 10895839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 88 - 219
Target Start/End: Complemental strand, 287429 - 287297
Alignment:
Q  88 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtgaaaaa-cattaa 186  Q
    |||||| || |||||||||||||| |||||| |||||||||||||||||||| |||| |||||||  ||| ||||| ||| |||| |||||||  |||||    
T  287429 ttggctaataaaaaataaatgagtcatgatccattttgattggctaataaaaaataaatgagtcatgatctattttgattggttgatgaaaaagtattaa 287330  T
Q  187 atgagatgagcaatatgaagatgtcacgtgtac 219  Q
    |||||| ||| ||| |||| ||| || ||||||    
T  287329 atgagaagagaaatttgaaaatgccatgtgtac 287297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 15605885 - 15605929
Alignment:
Q  176 aaaaacattaaatgagatgagcaatatgaagatgtcacgtgtaca 220  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  15605885 aaaaacattaaatgagatgagaaatatgaagatgtcacgtgtaca 15605929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 15614238 - 15614282
Alignment:
Q  176 aaaaacattaaatgagatgagcaatatgaagatgtcacgtgtaca 220  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  15614238 aaaaacattaaatgagatgagaaatatgaagatgtcacgtgtaca 15614282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 15624450 - 15624491
Alignment:
Q  177 aaaacattaaatgagatgagcaatatgaagatgtcacgtgta 218  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  15624450 aaaacattaaatgagatgagaaatatgaagatgtcacgtgta 15624491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 15637226 - 15637269
Alignment:
Q  177 aaaacattaaatgagatgagcaatatgaagatgtcacgtgtaca 220  Q
    |||||||||||||||||||| |||||||||||| ||||||||||    
T  15637226 aaaacattaaatgagatgagaaatatgaagatgacacgtgtaca 15637269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 15605704 - 15605746
Alignment:
Q  177 aaaacattaaatgagatgagcaatatgaagatgtcacgtgtac 219  Q
    |||||||||||||||||||| ||||||||||| ||||||||||    
T  15605704 aaaacattaaatgagatgagaaatatgaagatatcacgtgtac 15605746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 15637048 - 15637086
Alignment:
Q  182 attaaatgagatgagcaatatgaagatgtcacgtgtaca 220  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  15637048 attaaatgagatgagaaatatgaagatgtcacgtgtaca 15637086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 15648238 - 15648279
Alignment:
Q  177 aaaacattaaatgagatgagcaatatgaagatgtcacgtgta 218  Q
    |||||||||||||||||||| ||||||||||||||| |||||    
T  15648238 aaaacattaaatgagatgagaaatatgaagatgtcaggtgta 15648279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 12167193 - 12167241
Alignment:
Q  88 ttggctgatgaaaaataaatgagttatgatctattttgattggctaata 136  Q
    |||||| ||||||||||||||||| |||||| ||||||||||| |||||    
T  12167193 ttggctcatgaaaaataaatgagtcatgatccattttgattggataata 12167241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 12411621 - 12411669
Alignment:
Q  88 ttggctgatgaaaaataaatgagttatgatctattttgattggctaata 136  Q
    |||||| ||||||||||||||||| |||||| ||||||||||| |||||    
T  12411621 ttggctcatgaaaaataaatgagtcatgatccattttgattggataata 12411669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 15637777 - 15637817
Alignment:
Q  177 aaaacattaaatgagatgagcaatatgaagatgtcacgtgt 217  Q
    |||||||||||||||||||| ||||||||||| ||||||||    
T  15637777 aaaacattaaatgagatgagaaatatgaagatatcacgtgt 15637817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 16292016 - 16291972
Alignment:
Q  95 atgaaaaataaatgagttatgatctattttgattggctaataaaa 139  Q
    ||||||||||||||||| |||||| ||||||||||| ||||||||    
T  16292016 atgaaaaataaatgagtcatgatccattttgattggataataaaa 16291972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 192
Target Start/End: Original strand, 25113411 - 25113517
Alignment:
Q  88 ttggctgatgaaaaataaatgagttatgatcta--ttttgattggctaataaaatataattgagtcaacatcaattttaattagttggt-gaaaaacatt 184  Q
    |||||| ||||||||||||||||| ||||||||  |||||||||| ||| || |||||| |||||||  ||| ||||||||| | || |  |||||||||    
T  25113411 ttggctaatgaaaaataaatgagtcatgatctattttttgattggttaa-aatatataagtgagtcataatctattttaattggatgataaaaaaacatt 25113509  T
Q  185 aaatgaga 192  Q
    ||||||||    
T  25113510 aaatgaga 25113517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 15637409 - 15637452
Alignment:
Q  177 aaaacattaaatgagatgagcaatatgaagatgtcacgtgtaca 220  Q
    |||||||||||||||||||| ||||| |||||||||| ||||||    
T  15637409 aaaacattaaatgagatgagaaatattaagatgtcacatgtaca 15637452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 139
Target Start/End: Original strand, 17895037 - 17895088
Alignment:
Q  88 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaa 139  Q
    |||||| || |||||||||||||| ||||||| |||||||||||||| ||||    
T  17895037 ttggctcataaaaaataaatgagtcatgatctcttttgattggctaagaaaa 17895088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 15605385 - 15605427
Alignment:
Q  177 aaaacattaaatgagatgagcaatatgaagatgtcacgtgtac 219  Q
    |||||||||||||||||||| |||||||||||| ||| |||||    
T  15605385 aaaacattaaatgagatgagaaatatgaagatggcacatgtac 15605427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 15613738 - 15613780
Alignment:
Q  177 aaaacattaaatgagatgagcaatatgaagatgtcacgtgtac 219  Q
    |||||||||||||||||||| |||||||||||| ||| |||||    
T  15613738 aaaacattaaatgagatgagaaatatgaagatggcacatgtac 15613780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 215
Target Start/End: Original strand, 15613911 - 15613949
Alignment:
Q  177 aaaacattaaatgagatgagcaatatgaagatgtcacgt 215  Q
    |||||||||||||||||||| |||||| |||||||||||    
T  15613911 aaaacattaaatgagatgagaaatatgtagatgtcacgt 15613949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 195
Target Start/End: Original strand, 40267360 - 40267442
Alignment:
Q  114 tgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtgaaaaa-cattaaatgagatga 195  Q
    ||||| ||||||||||||||||||||  ||| ||| |||| ||| ||||| ||| |||| | ||||| |||||||||||||||    
T  40267360 tgatccattttgattggctaataaaaagtaaatgattcaatatctattttgattggttgataaaaaagcattaaatgagatga 40267442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 15606069 - 15606110
Alignment:
Q  177 aaaacattaaatgagatgagcaatatgaagatgtcacgtgta 218  Q
    |||||||||||||||||||| ||||||||||| |||| ||||    
T  15606069 aaaacattaaatgagatgagaaatatgaagatatcacatgta 15606110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 15614422 - 15614463
Alignment:
Q  177 aaaacattaaatgagatgagcaatatgaagatgtcacgtgta 218  Q
    |||||||||||||||||||| ||||||||||| |||| ||||    
T  15614422 aaaacattaaatgagatgagaaatatgaagatatcacatgta 15614463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 15637593 - 15637634
Alignment:
Q  177 aaaacattaaatgagatgagcaatatgaagatgtcacgtgta 218  Q
    |||||||||||||||||||| ||||| |||||||||| ||||    
T  15637593 aaaacattaaatgagatgagaaatattaagatgtcacatgta 15637634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 287618 - 287582
Alignment:
Q  19 ataaaaagtaatataagaatatgaaatgttaaacaaa 55  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  287618 ataaaaagtaatataagaataagaaatgttaatcaaa 287582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 209
Target Start/End: Original strand, 15624095 - 15624127
Alignment:
Q  177 aaaacattaaatgagatgagcaatatgaagatg 209  Q
    |||||||||||||||||||| ||||||||||||    
T  15624095 aaaacattaaatgagatgagaaatatgaagatg 15624127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 209
Target Start/End: Original strand, 15647883 - 15647915
Alignment:
Q  177 aaaacattaaatgagatgagcaatatgaagatg 209  Q
    |||||||||||||||||||| ||||||||||||    
T  15647883 aaaacattaaatgagatgagaaatatgaagatg 15647915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 88 - 172
Target Start/End: Original strand, 67256 - 67340
Alignment:
Q  88 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttg 172  Q
    |||||| |||||||||||||||||||||||| ||||||||| |||||||||| |||| |||||||  ||| ||||||||| ||||    
T  67256 ttggctaatgaaaaataaatgagttatgatccattttgatttgctaataaaaaataaatgagtcatgatccattttaattggttg 67340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 6440879 - 6440980
Alignment:
Q  95 atgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtg-aaaaacattaaatgagat 193  Q
    ||||||||||||||||| |||||  |||||||||||| ||||||| ||||||||||||   |  ||||| ||| |||| || ||||||||||||||||||    
T  6440879 atgaaaaataaatgagtcatgattcattttgattggcaaataaaaaataattgagtcatggtatattttgattggttgatgaaaaaacattaaatgagat 6440978  T
Q  194 ga 195  Q
    ||    
T  6440979 ga 6440980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 219
Target Start/End: Original strand, 9270763 - 9270891
Alignment:
Q  88 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtgaaaaa-cattaa 186  Q
    |||||| ||||||||||||||||| ||||| |||||| |||||| ||||||    || |||||||  ||  ||||| ||| |||| ||||||| ||||||    
T  9270763 ttggctaatgaaaaataaatgagtcatgatttattttaattggcaaataaa----aaatgagtcattatatattttgattggttgatgaaaaagcattaa 9270858  T
Q  187 atgagatgagcaatatgaagatgtcacgtgtac 219  Q
    |||||||||| |||  ||||||| || ||||||    
T  9270859 atgagatgagaaattagaagatgccatgtgtac 9270891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 139
Target Start/End: Original strand, 6445181 - 6445232
Alignment:
Q  88 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaa 139  Q
    |||||| || |||||||||||||| ||||||| |||||||||||||| ||||    
T  6445181 ttggctcataaaaaataaatgagtcatgatctcttttgattggctaagaaaa 6445232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 2766128 - 2766170
Alignment:
Q  177 aaaacattaaatgagatgagcaatatgaagatgtcacgtgtac 219  Q
    |||||||||||||||||||  |||||||||||||||| |||||    
T  2766128 aaaacattaaatgagatgaagaatatgaagatgtcacatgtac 2766170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 20919370 - 20919306
Alignment:
Q  88 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtca 152  Q
    ||||||| |||||| |||||| || ||||   |||||||||||||||||||| |||| |||||||    
T  20919370 ttggctggtgaaaactaaatgtgtcatgaatcattttgattggctaataaaaaataaatgagtca 20919306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 20928332 - 20928268
Alignment:
Q  88 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtca 152  Q
    ||||||| |||||| |||||| || ||||   |||||||||||||||||||| |||| |||||||    
T  20928332 ttggctggtgaaaactaaatgtgtcatgaatcattttgattggctaataaaaaataaatgagtca 20928268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 37197931 - 37197867
Alignment:
Q  88 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtca 152  Q
    |||||||||||||| |||||| || ||||   ||||||||||| |||||||| |||| |||||||    
T  37197931 ttggctgatgaaaactaaatgtgtcatgaatcattttgattggttaataaaaaataaatgagtca 37197867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 95 - 218
Target Start/End: Complemental strand, 3832266 - 3832141
Alignment:
Q  95 atgaaaaataaatgagttat-gatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggt-gaaaaacattaaatgaga 192  Q
    ||||||||||||||||| || |||| | ||||||||||||||||||  ||| ||| |||| ||| ||||| ||| |||| | ||||||||||||||||||    
T  3832266 atgaaaaataaatgagtcattgatccaatttgattggctaataaaaagtaaatgattcaatatctattttgattggttgatagaaaaacattaaatgaga 3832167  T
Q  193 tgagcaatatgaagatgtcacgtgta 218  Q
    |||  |  ||||||||||||| ||||    
T  3832166 tgaagagcatgaagatgtcacatgta 3832141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 219
Target Start/End: Complemental strand, 3417414 - 3417283
Alignment:
Q  88 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtgaaaa-acattaa 186  Q
    |||||||||||||||||||||||| |||||| |||||||||| |||||| || ||   |||||||| |   ||||| ||| |||| | ||||  ||||||    
T  3417414 ttggctgatgaaaaataaatgagtcatgatccattttgattgactaatagaaaatggatgagtcaataaacattttgattggttgataaaaatgcattaa 3417315  T
Q  187 atgagatgagcaatatgaagatgtcacgtgtac 219  Q
    |||||||| | ||||||||||||||| ||||||    
T  3417314 atgagatg-gaaatatgaagatgtcatgtgtac 3417283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 219
Target Start/End: Original strand, 8314021 - 8314128
Alignment:
Q  113 atgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggt-gaaaaacattaaatgagatgagcaatatgaagatgtc 211  Q
    |||||| |||||||||||||||||||| |||| |||||||  ||| ||||| ||| |||| |  |||||||||||||||||  || ||| ||||||||||    
T  8314021 atgatcaattttgattggctaataaaaaataaatgagtcatgatctattttgattggttgataaaaaaacattaaatgagaaaagaaatttgaagatgtc 8314120  T
Q  212 acgtgtac 219  Q
    | ||||||    
T  8314121 atgtgtac 8314128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 219
Target Start/End: Complemental strand, 11440916 - 11440796
Alignment:
Q  98 aaaaataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtgaaaa-acattaaatgagatgag 196  Q
    |||||||||||||| |||||| |||||||||| ||||||||| |||| ||||| || ||| ||||| ||| |||  | ||||  |||||||| |||||||    
T  11440916 aaaaataaatgagtcatgatccattttgattgactaataaaaaataaatgagttaagatccattttgattggttaataaaaatgcattaaattagatgag 11440817  T
Q  197 caatatgaagatgtcacgtgtac 219  Q
      |||||||||||||| ||||||    
T  11440816 --atatgaagatgtcatgtgtac 11440796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 139
Target Start/End: Original strand, 8314035 - 8314086
Alignment:
Q  88 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaa 139  Q
    |||||| || |||||||||||||| |||||||||||||||||| | ||||||    
T  8314035 ttggctaataaaaaataaatgagtcatgatctattttgattggttgataaaa 8314086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 219
Target Start/End: Complemental strand, 46514475 - 46514343
Alignment:
Q  88 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtgaaaaa-cattaa 186  Q
    |||||| ||||||||||||||| | || ||  |||||||||||  |||||||  ||| ||||||   ||  ||||| ||| |||| ||||||| ||||||    
T  46514475 ttggctaatgaaaaataaatgaatcatcattcattttgattggtaaataaaaagtaaatgagtcgtgatatattttgattggttgatgaaaaaacattaa 46514376  T
Q  187 atgagatgagcaatatgaagatgtcacgtgtac 219  Q
    |||||||||| |||  ||||||| || ||||||    
T  46514375 atgagatgagaaattagaagatgccatgtgtac 46514343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 45049601 - 45049537
Alignment:
Q  88 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtca 152  Q
    |||||| ||||||||||||||||| |||||| ||||||||||||||||||||  ||| |||||||    
T  45049601 ttggctaatgaaaaataaatgagtcatgatccattttgattggctaataaaaattaaatgagtca 45049537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 5243273 - 5243321
Alignment:
Q  88 ttggctgatgaaaaataaatgagttatgatctattttgattggctaata 136  Q
    |||||| ||||||||||||||||| |||||| ||||||||||| |||||    
T  5243273 ttggctcatgaaaaataaatgagtcatgatccattttgattggataata 5243321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 45049791 - 45049755
Alignment:
Q  19 ataaaaagtaatataagaatatgaaatgttaaacaaa 55  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  45049791 ataaaaagtaatataagaataagaaatgttaatcaaa 45049755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 7946588 - 7946630
Alignment:
Q  177 aaaacattaaatgagatgagcaatatgaagatgtcacgtgtac 219  Q
    |||||||||||||||||||  |||||||||||||||| |||||    
T  7946588 aaaacattaaatgagatgaagaatatgaagatgtcacatgtac 7946630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 19205915 - 19205976
Alignment:
Q  88 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgag 149  Q
    |||||| |||||||||| |||||| |||||| |||| |||||||||||| || |||| ||||    
T  19205915 ttggctcatgaaaaatagatgagtcatgatccatttagattggctaatataaaataagtgag 19205976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 29857791 - 29857750
Alignment:
Q  95 atgaaaaataaatgagttatgatctattttgattggctaata 136  Q
    ||||||||||||||||| |||||| ||||||||||| |||||    
T  29857791 atgaaaaataaatgagtcatgatccattttgattggataata 29857750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 19205728 - 19205764
Alignment:
Q  19 ataaaaagtaatataagaatatgaaatgttaaacaaa 55  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  19205728 ataaaaagtaacataagaataagaaatgttaaacaaa 19205764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 188
Target Start/End: Original strand, 17054 - 17139
Alignment:
Q  102 ataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtg-aaaaacattaaat 188  Q
    |||||| ||| |||||||||||| ||||| |||||||| |||| |||||||  ||| ||||| ||| |||| || |||||||||||||    
T  17054 ataaataagtcatgatctattttaattggttaataaaaaataaatgagtca--atctattttgattggttgatgaaaaaacattaaat 17139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 52555 - 52611
Alignment:
Q  96 tgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtca 152  Q
    |||||| ||||||||| ||| || || ||||||||||||||||| |||| |||||||    
T  52555 tgaaaactaaatgagtcatggtccatcttgattggctaataaaaaataaatgagtca 52611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University