View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16014_high_1_N (Length: 563)
Name: NF16014_high_1_N
Description: NF16014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16014_high_1_N |
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Alignment Details
Target: chr5 (Bit Score: 457; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 27 - 539
Target Start/End: Original strand, 37704454 - 37704966
Alignment:
| Q |
27 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacat |
126 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37704454 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacat |
37704553 |
T |
|
| Q |
127 |
ttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagaccagactttttgaacgtaattagcac |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37704554 |
ttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagaccagactttttgaacgtaattagcac |
37704653 |
T |
|
| Q |
227 |
gaaagttggaatcttatttcaagttgtgataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaa |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37704654 |
gaaagttggaatcttatttcaagttgtgataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaa |
37704753 |
T |
|
| Q |
327 |
aataacattaattgtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagcaaattacgatacttttaagttatttaattataaca |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37704754 |
aataacattaattgtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagcaaattacgagacttttaagttatttaattataaca |
37704853 |
T |
|
| Q |
427 |
aatcggnnnnnnnnnnnnnnnncgtatcacttacgtcatttaagttatttaattataacaagttagttatgtagttgctcaaaaaacaagttagttatgt |
526 |
Q |
| |
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|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37704854 |
aatcggttttttaagattttttcgtatcacttgcgtcatttaagttatttaattataacaagttagttatgtagttgctcaaaaaacaagttagttatgt |
37704953 |
T |
|
| Q |
527 |
aagtatttttcgt |
539 |
Q |
| |
|
||||||||||||| |
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|
| T |
37704954 |
aagtatttttcgt |
37704966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 28 - 391
Target Start/End: Original strand, 37698974 - 37699349
Alignment:
| Q |
28 |
ccaaaaaggttgacttattagattgtttgcaaa--ttgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgaca |
125 |
Q |
| |
|
|||||||| |||| |||||||||||||| |||| ||||||||| ||||||||||||||||| ||||||||||||||||||| | ||||||||||||||| |
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|
| T |
37698974 |
ccaaaaagtttgagttattagattgtttacaaacattgagtctaggtattcccttattttgtgttgggggtgcttttcataaccgtatactgatatgaca |
37699073 |
T |
|
| Q |
126 |
tttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagc |
224 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||| ||| |||||||| ||||||||||||| |
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|
| T |
37699074 |
tttggcaacaatattaattcagtaacaatcatagaaaagtttggtgttcattaaactaaataacatcttggaaaaccaagacttttcgaacgtaattagc |
37699173 |
T |
|
| Q |
225 |
acgaaagttggaatcttatttcaagttgtg---ataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatg |
321 |
Q |
| |
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|| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||| ||||| |
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|
| T |
37699174 |
actaaagttggaatcttattgcaagttgtgataataagataacaaattcatttaagtagcaatcagaatgagtaatttgcttaaaaatacacctaaaatg |
37699273 |
T |
|
| Q |
322 |
aagaaaat------aacattaattgtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagc |
391 |
Q |
| |
|
|||||||| |||||||||||||||||| | ||||||||||||||||||||| || ||| |||||||||||| |
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|
| T |
37699274 |
aagaaaataataacaacattaattgtatttagcaacggagacttagacttcttcaactgaacagactttaaagagc |
37699349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 27 - 331
Target Start/End: Original strand, 37437520 - 37437823
Alignment:
| Q |
27 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacat |
126 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||| |||||| ||||||||| |||| | ||||| |||||||||||| | |||| |||||||||| |
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|
| T |
37437520 |
accaaaaagtctgacttattagattgtttacaaattcagtctagctattcccttgttttaatgtgggg-tgcttttcataaccgtatagtgatatgacaa |
37437618 |
T |
|
| Q |
127 |
ttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagca |
225 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| || || ||||||| |||||||| ||||||||||||| |
|
|
| T |
37437619 |
ttggcaacaatattaattcaataacaatcatagaaaagtttggtgttcattaaactaaataacatattggaagaccaagacttttcgaacgtaattagc- |
37437717 |
T |
|
| Q |
226 |
cgaaagttggaatcttatttcaagttgtg---ataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatga |
322 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||| |
|
|
| T |
37437718 |
---aagttggaatcttattgcaagttgtgataataagataacaaattcatttaagtagcaatcagaatgagtaatttgcttaaaaatacacctgaaatga |
37437814 |
T |
|
| Q |
323 |
agaaaataa |
331 |
Q |
| |
|
||||||||| |
|
|
| T |
37437815 |
agaaaataa |
37437823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 27 - 275
Target Start/End: Original strand, 37698636 - 37698864
Alignment:
| Q |
27 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacat |
126 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||| | | |||| |||||||||| |
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|
| T |
37698636 |
accaaaaagtttgacttattagattgtttacaaattgagtctaagtattcccttattttgttg-----------------accgtatagtgatatgacaa |
37698718 |
T |
|
| Q |
127 |
ttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacca-gactttttgaacgtaatta--- |
222 |
Q |
| |
|
|||||||||||||||| | |||||| ||||||||||||||| ||||||||||||| ||||| |||||||| |||||||| |||||||||| |
|
|
| T |
37698719 |
ttggcaacaatattaa--------caatcatacaaaagtttggtgttcgttaaactaaataacatcttggaagaccaagacttttttaacgtaattaatt |
37698810 |
T |
|
| Q |
223 |
-gcacgaaagttggaatcttatttcaagttgtgataagataacaaattcattta |
275 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37698811 |
agcactaaagttggaatcttattgcaagttgtgataagataacaaattcattta |
37698864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 449 - 491
Target Start/End: Original strand, 30384256 - 30384298
Alignment:
| Q |
449 |
cgtatcacttacgtcatttaagttatttaattataacaagtta |
491 |
Q |
| |
|
||||| ||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
30384256 |
cgtattacttacgtcttttaagttatttaattgtaacaagtta |
30384298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 486
Target Start/End: Complemental strand, 1630048 - 1630012
Alignment:
| Q |
450 |
gtatcacttacgtcatttaagttatttaattataaca |
486 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
1630048 |
gtatcacttacgtcttttaagttatttaatcataaca |
1630012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 155 - 391
Target Start/End: Complemental strand, 16841109 - 16840857
Alignment:
| Q |
155 |
catagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgt |
253 |
Q |
| |
|
|||| |||||||||||||| | |||||||||||| ||||| ||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||| |
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|
| T |
16841109 |
catacaaaagtttggtgtttaataaactaaataaaatcttggaagaccaagactttttgaacgtaattagcac-taagttggaatcttattgcaagttgt |
16841011 |
T |
|
| Q |
254 |
g------ataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaa----atacacctgaaatgaagaaaat------aacattaa |
337 |
Q |
| |
|
| ||||||||||||||||||||||||| |||||||| ||| |||| ||||||||| |||||||||||||||||||||| |||||||| |
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|
| T |
16841010 |
gatattaataagataacaaattcatttaagtaccaatcacaatgaataatttgcttaaaaatatatacacctgaaatgaagaaaataataacaacattaa |
16840911 |
T |
|
| Q |
338 |
ttgtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagc |
391 |
Q |
| |
|
||||||||||| |||||||||||||||| |||| | | ||||||||||||||| |
|
|
| T |
16840910 |
atgtatttagaagcggagacttagacttcgtcaactatccatactttaaagagc |
16840857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 451 - 491
Target Start/End: Original strand, 31095092 - 31095132
Alignment:
| Q |
451 |
tatcacttacgtcatttaagttatttaattataacaagtta |
491 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31095092 |
tatcacttacgtcctttaagttatttaattataacaagtta |
31095132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 451 - 493
Target Start/End: Original strand, 17411089 - 17411131
Alignment:
| Q |
451 |
tatcacttacgtcatttaagttatttaattataacaagttagt |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
17411089 |
tatcacttacgtcatttaagttatttaattgtaacaagttagt |
17411131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 493
Target Start/End: Complemental strand, 196287 - 196244
Alignment:
| Q |
450 |
gtatcacttacgtcatttaagttatttaattataacaagttagt |
493 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| || ||||| |
|
|
| T |
196287 |
gtatcacttacgtcatttaagttatttaattgtaataatttagt |
196244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 451 - 496
Target Start/End: Original strand, 18080600 - 18080645
Alignment:
| Q |
451 |
tatcacttacgtcatttaagttatttaattataacaagttagttat |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
18080600 |
tatcacttacgtcatttaagttatttaattgtaataagttagttat |
18080645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 493
Target Start/End: Complemental strand, 44291463 - 44291420
Alignment:
| Q |
450 |
gtatcacttacgtcatttaagttatttaattataacaagttagt |
493 |
Q |
| |
|
|||||||||| ||| |||||||||||||||| |||||||||||| |
|
|
| T |
44291463 |
gtatcacttatgtcctttaagttatttaattgtaacaagttagt |
44291420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 488
Target Start/End: Complemental strand, 12422390 - 12422352
Alignment:
| Q |
450 |
gtatcacttacgtcatttaagttatttaattataacaag |
488 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
12422390 |
gtatcacttacgtcttttaagttatttaattttaacaag |
12422352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 461 - 493
Target Start/End: Original strand, 32857805 - 32857837
Alignment:
| Q |
461 |
gtcatttaagttatttaattataacaagttagt |
493 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
32857805 |
gtcatttaagttatttaattgtaacaagttagt |
32857837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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