View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16014_low_1 (Length: 589)
Name: NF16014_low_1
Description: NF16014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16014_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 13 - 573
Target Start/End: Original strand, 41081404 - 41081959
Alignment:
| Q |
13 |
aatattgctaagactcaacccccaacaaacttatctcattttggaagattccgtgtcaacttttattacaataaacaatgcaaaaaattagtcacacctt |
112 |
Q |
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| T |
41081404 |
aatattgctaagactcaacccccaacaaacttatctcattttggaagattccgtgtcaacttttattacaataaacaatgcaaaaaattagtcacacctt |
41081503 |
T |
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| Q |
113 |
gggtatgtgtagggaaagaattactggtctaccattctctatatgccattataggatgccataagaatctacttgtattctaaattacaagttgtgcata |
212 |
Q |
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| T |
41081504 |
gggtatgtgtagggaaagagttactggtctaccattctctatatgccattataggatcccataagaatctacttgtattctaaattacaagttgtgcata |
41081603 |
T |
|
| Q |
213 |
ttatgttttagtcattctaccaagagagttagattttctcaaaggtatgtttaacacttgtttaaaggatttccaaacatgtactttagcaatttacatc |
312 |
Q |
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| T |
41081604 |
ttatgttttagtcattctaccaagagagttagattttctcaaaggtatgtttaacacttgtttaaaggatttccaaacatgtactttagcaatttaca-- |
41081701 |
T |
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| Q |
313 |
ttcattaaaattaataattaaagtaatccaagctatgaacaagaaaatcaatgattagtaccaattatatgctatgtcacaagtca-ttgatagttaatt |
411 |
Q |
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| T |
41081702 |
-tcattaaaattaataattaaagtaatccaagctatgaacaagaaaatga---tttagtaccaattatatgctatgacacaagtcatttgatagttaatt |
41081797 |
T |
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| Q |
412 |
atctgaaacatgtggtgtgtaaggtcatgactcatgaggaagtcctaaaataccggagatcatcacattgagataagagcaaccacataagtgagattga |
511 |
Q |
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| T |
41081798 |
atctgaaacatgtggtgtgtaaggtcatgactcatgaggaagtcctaaaataccggagatcatcacattgagataagagcaaccacataagtgagattga |
41081897 |
T |
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| Q |
512 |
acaccactaatgtggaacttctaactgatacctgacataccaacatagtggaggttcaatct |
573 |
Q |
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| T |
41081898 |
acaccactaatgtggaacttctaactgatacctgacataccaacatagtggaggttcaatct |
41081959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 498
Target Start/End: Complemental strand, 24076706 - 24076665
Alignment:
| Q |
457 |
taaaataccggagatcatcacattgagataagagcaaccaca |
498 |
Q |
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| T |
24076706 |
taaaataccggagatcatcacattgtgttaagatcaaccaca |
24076665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 514
Target Start/End: Original strand, 38803999 - 38804040
Alignment:
| Q |
473 |
atcacattgagataagagcaaccacataagtgagattgaaca |
514 |
Q |
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| T |
38803999 |
atcacattgagttaagagcaaccacacaagtgaggttgaaca |
38804040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 474 - 518
Target Start/End: Complemental strand, 11443003 - 11442959
Alignment:
| Q |
474 |
tcacattgagataagagcaaccacataagtgagattgaacaccac |
518 |
Q |
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| T |
11443003 |
tcacattgggctaagagcaaccacacaagtgagattggacaccac |
11442959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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