View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16015_high_4 (Length: 362)
Name: NF16015_high_4
Description: NF16015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16015_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 12 - 347
Target Start/End: Complemental strand, 53116636 - 53116301
Alignment:
| Q |
12 |
ccaaaaatatgtgtgtgaagtagatgataattatgatataaatttcagattgcaatggagcatgtgctgctaggtgccgtttatcatcacggccgcacct |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53116636 |
ccaaaaatatgtgtgtgaagtagatgataattatgatataaatttcagattgcaatggagcatgtgctgctaggtgccgtttatcatcacggccgcacct |
53116537 |
T |
|
| Q |
112 |
ctgccacagggcatgtggaacttgctgcagtcggtgcaactgcgtgccgccgggaacctccggtaaccaagaaatgtgtccctgctatgccaaccaaacc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53116536 |
ctgccacagggcatgtggaacttgctgcagtcggtgcaactgcgtgccgccgggaacttccggtaaccaagaaatgtgtccctgctatgccaaccaaacc |
53116437 |
T |
|
| Q |
212 |
acccatggaggcagacgcaagtgcccttgaattgagttgaattcatcacttccttaatcaccatggaaaatgcaacttatttatctataatatgatttgt |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
53116436 |
acccatggaggcagacgcaagtgcccttgaattgagttgaattcatcacttccttaatcaccatggaaaatgcaacttatttatctacaatataatttgc |
53116337 |
T |
|
| Q |
312 |
aatcgcatatataatgcgttatgtacaataacaagt |
347 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |
|
|
| T |
53116336 |
aatcgcatatataatgcgttacgtacaataacaagt |
53116301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 12 - 194
Target Start/End: Complemental strand, 53103360 - 53103178
Alignment:
| Q |
12 |
ccaaaaatatgtgtgtgaagtagatgataattatgatataaatttcagattgcaatggagcatgtgctgctaggtgccgtttatcatcacggccgcacct |
111 |
Q |
| |
|
|||||||||| |||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||| |
|
|
| T |
53103360 |
ccaaaaatatctgtgtgtagtagatgataaatttgatataaatttcagattgcaatggagcatgtgctgctaggtgctgtttatcatcacggcagcgcct |
53103261 |
T |
|
| Q |
112 |
ctgccacagggcatgtggaacttgctgcagtcggtgcaactgcgtgccgccgggaacctccggtaaccaagaaatgtgtccct |
194 |
Q |
| |
|
| | ||||||||||||||||||||||||||||| |||||||||||||| | |||||| ||||||||||||||||||||||||| |
|
|
| T |
53103260 |
cggtcacagggcatgtggaacttgctgcagtcgctgcaactgcgtgccactgggaacttccggtaaccaagaaatgtgtccct |
53103178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 235 - 347
Target Start/End: Complemental strand, 53103181 - 53103069
Alignment:
| Q |
235 |
cccttgaattgagttgaattcatcacttccttaatcaccatggaaaatgcaacttatttatctataatatgatttgtaatcgcatatataatgcgttatg |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
53103181 |
cccttgaattgagttgaattcatcacttccttaatcaccatggaaaatgcaacttatttatctagaatatgatttgtaatcgcatatataatgcgttatg |
53103082 |
T |
|
| Q |
335 |
tacaataacaagt |
347 |
Q |
| |
|
||||||||||||| |
|
|
| T |
53103081 |
tacaataacaagt |
53103069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University