View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16015_high_7 (Length: 266)

Name: NF16015_high_7
Description: NF16015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16015_high_7
NF16015_high_7
[»] chr4 (3 HSPs)
chr4 (54-247)||(30684939-30685132)
chr4 (124-218)||(28467729-28467823)
chr4 (124-218)||(28486212-28486307)
[»] chr2 (1 HSPs)
chr2 (61-104)||(20135565-20135608)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 54 - 247
Target Start/End: Original strand, 30684939 - 30685132
Alignment:
Q  54 caatataagagaaatagacacaaagtcaccgtgattttcctgccttaaagttagcaaatccggatccgacttatatatgtttgacacatttttgtattga 153  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30684939 caatataagagaaataaacacaaagtcaccgtgattttcctgccttaaagttagcaaatccggatccgacttatatatgtttgacacatttttgtattga 30685038  T
Q  154 atgactcgaaatgcagtgaagagacttcttctaagaaggcaagggaagatgatatttctggggtaggcctagctgatatagaggaggaattaat 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30685039 atgactcgaaatgcagtgaagagacttcttctaagaaggcaagggaagatgatatttctggggtaggcctagctgatatagaggaggaattaat 30685132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 124 - 218
Target Start/End: Original strand, 28467729 - 28467823
Alignment:
Q  124 ttatatatgtttgacacatttttgtattgaatgactcgaaatgcagtgaagagacttcttctaagaaggcaagggaagatgatatttctggggta 218  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  28467729 ttatatatgttcgacacatttttgtattgaatgactctaaatgcagtgaagagacttcttctaagaaggcaagggaagatgatgtttttggggta 28467823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 124 - 218
Target Start/End: Original strand, 28486212 - 28486307
Alignment:
Q  124 ttatatatgtttgacacatttt-tgtattgaatgactcgaaatgcagtgaagagacttcttctaagaaggcaagggaagatgatatttctggggta 218  Q
    |||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  28486212 ttatatatgtttgacacattttttgtattgaatgattctaaatgcagtgaagagacttcttctaagaaggcaggggaagatgatatttttggggta 28486307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 20135565 - 20135608
Alignment:
Q  61 agagaaatagacacaaagtcaccgtgattttcctgccttaaagt 104  Q
    |||||||||||||| |||||||||| | ||||||||||||||||    
T  20135565 agagaaatagacactaagtcaccgtaactttcctgccttaaagt 20135608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University