View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16015_low_1 (Length: 558)
Name: NF16015_low_1
Description: NF16015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16015_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 6 - 551
Target Start/End: Complemental strand, 49464994 - 49464450
Alignment:
| Q |
6 |
atctaagcatttatttatgggttataaatgtcttttatcttaaaaaatagataaatgtttacctttagtcatgttttctgataagcatgggccgtttggt |
105 |
Q |
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| T |
49464994 |
atctaagcatttatttatgggttataaatgtcttttatcttaaaaaatagataaatgtttacctttagtcatgttttctgataagcatgggccgt--ggt |
49464897 |
T |
|
| Q |
106 |
ccctaaactcaacttcgttggggaaaactgcttttaaaatttgagggatttaacattgatgttttcctattttgtatgactaaatatatttaaccgttga |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49464896 |
ccctaaactcaacttcgttggggaaaactgcttttaaaatttgagggatttaacattgatgttttcctattttgtatgactaaatatatttaaccgttga |
49464797 |
T |
|
| Q |
206 |
tttattatgttaacacttatgctataaatagaagaactactttggttggccttgcaagttttc-attaaatatggtacaatcaggtttcctagattttat |
304 |
Q |
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| T |
49464796 |
tttattatgttaacacttatgctataaatagaagaactactttggttggccttgcaagttttctattaaatatggtacaatcaggtttcctagattttat |
49464697 |
T |
|
| Q |
305 |
tatttgttacaccacatggtatgtaatcatgatcaaaagtgcagtcacaaatcattttcatttgaattattttagccattgctgagttgattgcatattt |
404 |
Q |
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| T |
49464696 |
tatttgttacatcacatggtatgtaatcatgatcaaaagtgcagtcacaaatcatgttcatttgaattattttagccattgctgagttgattgcatattt |
49464597 |
T |
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| Q |
405 |
ccagagatattgtgattgaagattcacagaaaataaaggagttgggtttcacaatctttgagttgttgtcagaggcactgggacttaactcttcttacct |
504 |
Q |
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| T |
49464596 |
ccagagatattgtgattgaatattcacagaaaataaaggagttgggtttcacaatctttgagttgttgtcagaggcactaggacttaactcttcttacct |
49464497 |
T |
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| Q |
505 |
caaagagttgaattgtgctgaaggactctttattttgggtctctgct |
551 |
Q |
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| T |
49464496 |
caaagagttgaattgtgctgaaggactctttattttgggtcactgct |
49464450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 4e-61; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 346 - 545
Target Start/End: Original strand, 29463616 - 29463815
Alignment:
| Q |
346 |
cagtcacaaatcattttcatttgaattattttagccattgctgagttgattgcatatttccagagatattgtgattgaagattcacagaaaataaaggag |
445 |
Q |
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| T |
29463616 |
cagttacaaatcatgttcatttgaattattttagtcattgatggattgattgcatacttgcagagatattgtgattgaatattcacaaaaaataaagaat |
29463715 |
T |
|
| Q |
446 |
ttgggtttcacaatctttgagttgttgtcagaggcactgggacttaactcttcttacctcaaagagttgaattgtgctgaaggactctttattttgggtc |
545 |
Q |
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| T |
29463716 |
ttgggtttcacaatctttgagttattgtcagaggcactaggacttaacccttcttacctaaaagagtttggttgtgctgaaggactctttactttgggtc |
29463815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 362 - 545
Target Start/End: Original strand, 19845841 - 19846024
Alignment:
| Q |
362 |
tcatttgaattattttagccattgctgagttgattgcatatttccagagatattgtgattgaagattcacagaaaataaaggagttgggtttcacaatct |
461 |
Q |
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| T |
19845841 |
tcatttgaattgatttaaccatggttgagttgactacatacttgcagagatattgtgattgaatattcacagaaaataagtgatttaggtttcagaatct |
19845940 |
T |
|
| Q |
462 |
ttgagttgttgtcagaggcactgggacttaactcttcttacctcaaagagttgaattgtgctgaaggactctttattttgggtc |
545 |
Q |
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| T |
19845941 |
ttgagttgttgtcagaggcagtaggacttgatccttcttacttaaaagagttgaagtgtgctgaaggaatctatattatgggtc |
19846024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 406 - 538
Target Start/End: Original strand, 19890841 - 19890973
Alignment:
| Q |
406 |
cagagatattgtgattgaagattcacagaaaataaaggagttgggtttcacaatctttgagttgttgtcagaggcactgggacttaactcttcttacctc |
505 |
Q |
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|||||||| ||||||| || |||| || ||||||| ||| |||||||||| |||||||||||| ||||| |||||||| |||||| | | ||||||| |
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| T |
19890841 |
cagagatagtgtgattaaatattcccaaaaaataagggatttgggtttcataatctttgagttattgtcggaggcactaggacttgatcgtgattacctc |
19890940 |
T |
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| Q |
506 |
aaagagttgaattgtgctgaaggactctttatt |
538 |
Q |
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| T |
19890941 |
aaagagttaaattgttgtgaaggactctttatt |
19890973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 161 - 240
Target Start/End: Original strand, 29463438 - 29463516
Alignment:
| Q |
161 |
ttgatgttttcctattttgtatgactaaatatatttaaccgttgatttattatgttaacacttatgctataaatagaaga |
240 |
Q |
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| T |
29463438 |
ttgatgtttttctattttgtatgactgaatatatttgacccttgatttattatg-taactcttatgttataaatagaaga |
29463516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 3e-46; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 308 - 545
Target Start/End: Original strand, 1093936 - 1094178
Alignment:
| Q |
308 |
ttgttacaccacatggtatgtaatcatgatcaaaagtgca-----gtcacaaatcattttcatttgaattattttagccattgctgagttgattgcatat |
402 |
Q |
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| T |
1093936 |
ttgttacatcacatgacatgcaatcatgataaaaagtgcatttcagtaacaaatcatgtacatttgaattattatagtcactgatggattgattgcatac |
1094035 |
T |
|
| Q |
403 |
ttccagagatattgtgattgaagattcacagaaaataaaggagttgggtttcacaatctttgagttgttgtcagaggcactgggacttaactcttcttac |
502 |
Q |
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| T |
1094036 |
ttgcagagatattgtgattgaatattcacaaaaaataaagaatttgggtttcaaaatctttgagttgttatcagaggcactaggatttaacccttcttac |
1094135 |
T |
|
| Q |
503 |
ctcaaagagttgaattgtgctgaaggactctttattttgggtc |
545 |
Q |
| |
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|| |||||||| |||||| |||||||| |||| |||||||| |
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| T |
1094136 |
cttaaagagtttggttgtgccgaaggactatttactttgggtc |
1094178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 1093841 - 1093889
Alignment:
| Q |
129 |
aaaactgcttttaaaatttgagggatttaacattgatgttttcctattt |
177 |
Q |
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| T |
1093841 |
aaaactggtttttaaatttgagagatttaacattgatgtttttctattt |
1093889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 1093451 - 1093503
Alignment:
| Q |
6 |
atctaagcatttatttatgggttataaatgtcttttatcttaaaaaatagata |
58 |
Q |
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||||| |||||||||||||||||||| |||| | | |||||||||| |||||| |
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| T |
1093451 |
atctaggcatttatttatgggttatatatgtttctaatcttaaaaagtagata |
1093503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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