View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16015_low_3 (Length: 401)
Name: NF16015_low_3
Description: NF16015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16015_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 20 - 389
Target Start/End: Complemental strand, 18664633 - 18664264
Alignment:
| Q |
20 |
tcatattcttgtagatttggatcgttgtttgcgattaatgcaacaatgtgggaagaccaagtctcttgaagaggcaaaagttgtacacagatatgtttta |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18664633 |
tcatattcttgtagatttggatcgttgtttgcgattaatgcaacaatgtgggaagaccaagtctcttgaagaggcaaaagttgtacacagatatgtttta |
18664534 |
T |
|
| Q |
120 |
caacatttgtcacctcttaaagtcagcacatgcaatggaatattggagatgtattttcaatgtggttctgtagatgatgcagtcaacgtattcaagaaca |
219 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18664533 |
caacatttgtcacctcttaaagtcagcacatgcaatggaatattggagatgtattttcaatgtggttctgtagatgatgcagtcaacgtattcaagaaca |
18664434 |
T |
|
| Q |
220 |
tgactgagcgcgatttgactactatatatattatgataaagcagctcgctaagaatgggtttgcagaagattcaattgatttatttactcaatttaaaag |
319 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18664433 |
tgactgagcgcgatttgactactatatgtattatgataaagcagctcgctaagaatgggtttgcagaagattcaattgatttatttactcaatttaaaag |
18664334 |
T |
|
| Q |
320 |
gtcaggactaaaacctgatggccaaatgtttattggggtttttggtgcatgtagtatgttgggagatatt |
389 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18664333 |
gtcaggactaaaacctgatggccaaatgtttattggggtttttggtgcatgtagtatgttgggagatatt |
18664264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 33 - 222
Target Start/End: Complemental strand, 18664920 - 18664731
Alignment:
| Q |
33 |
gatttggatcgttgtttgcgattaatgcaacaatgtgggaagaccaagtctcttgaagaggcaaaagttgtacacagatatgttttacaacatttgtcac |
132 |
Q |
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|||||| ||| |||||||||||||||||||| ||||| ||| | ||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
18664920 |
gatttgtatctttgtttgcgattaatgcaactgtgtggaaaggctgagtttcttgaagaggcaaaagttgtacacatatatgttttacaacatttgtcac |
18664821 |
T |
|
| Q |
133 |
ctcttaaagtcagcacatgcaatggaatattggagatgtattttcaatgtggttctgtagatgatgcagtcaacgtattcaagaacatga |
222 |
Q |
| |
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|||| | ||| ||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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|
| T |
18664820 |
ctctcacagttcgcacatgcattagaatattagagatgtattttcaatgtggttctgtagatgatgcagtcaacgtgttcaggaacatga |
18664731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 20 - 389
Target Start/End: Original strand, 15079195 - 15079564
Alignment:
| Q |
20 |
tcatattcttgtagatttggatcgttgtttgcgattaatgcaacaatgtgggaagaccaagtctcttgaagaggcaaaagttgtacacagatatgtttta |
119 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15079195 |
tcatattcatgtagatttggatcgttgtttgagattaatgcaacaatgtgggaagaccaagtctcttgaagaggcaaaagttgtacacagatatgtttta |
15079294 |
T |
|
| Q |
120 |
caacatttgtcacctcttaaagtcagcacatgcaatggaatattggagatgtattttcaatgtggttctgtagatgatgcagtcaacgtattcaagaaca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15079295 |
caacatttgtcacctcttaaagtcagcacatgcaatggaatattggagatgtattttcaatgtggttctgtagatgatgcagtcaacgtattcaagaaca |
15079394 |
T |
|
| Q |
220 |
tgactgagcgcgatttgactactatatatattatgataaagcagctcgctaagaatgggtttgcagaagattcaattgatttatttactcaatttaaaag |
319 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15079395 |
tgaatgaacgcgatttgactactatatatattatgataaagcagctcgctaagaatgggtttgcagaagattcaattgatttatttactcaatttaaaag |
15079494 |
T |
|
| Q |
320 |
gtcaggactaaaacctgatggccaaatgtttattggggtttttggtgcatgtagtatgttgggagatatt |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15079495 |
gtcaggactaaaacctgatggccaaatgtttattggggtttttggtgcatgtagtatgttgggagatatt |
15079564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 33 - 222
Target Start/End: Original strand, 15078908 - 15079097
Alignment:
| Q |
33 |
gatttggatcgttgtttgcgattaatgcaacaatgtgggaagaccaagtctcttgaagaggcaaaagttgtacacagatatgttttacaacatttgtcac |
132 |
Q |
| |
|
|||||| ||| |||||||||||||||||||| ||||| ||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15078908 |
gatttgtatctttgtttgcgattaatgcaactgtgtggaaaggctgagtttcttgaagaggcaaaagttgtacacagatatgttttacaacatttgtcac |
15079007 |
T |
|
| Q |
133 |
ctcttaaagtcagcacatgcaatggaatattggagatgtattttcaatgtggttctgtagatgatgcagtcaacgtattcaagaacatga |
222 |
Q |
| |
|
|||| | |||| ||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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|
| T |
15079008 |
ctctcacagtccgcacatgcattagaatattagagatgtattttcaatgtggttctgtagatgatgcagtcaacgtgttcaggaacatga |
15079097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 169; Significance: 2e-90; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 33 - 389
Target Start/End: Complemental strand, 7535169 - 7534813
Alignment:
| Q |
33 |
gatttggatcgttgtttgcgattaatgcaacaatgtgggaagaccaagtctcttgaagaggcaaaagttgtacacagatatgttttacaacatttgtcac |
132 |
Q |
| |
|
|||||| | |||||||||| ||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||| ||| ||| ||||||||| | |
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| T |
7535169 |
gatttgcagcgttgtttgcaattaatgcacgtttgtgggaagactaagtctcttgaagaggcaagagttgtacacagacatgctttgcaacatttgcatc |
7535070 |
T |
|
| Q |
133 |
ctcttaaagtcagcacatgcaatggaatattggagatgtattttcaatgtggttctgtagatgatgcagtcaacgtattcaagaacatgactgagcgcga |
232 |
Q |
| |
|
|||||| || |||||| |||| || ||||||||||||||||| ||||||||||| ||||||||||| || |||| ||||||| |||| ||||| ||| |
|
|
| T |
7535069 |
ctcttacggttagcacagacaatagagtattggagatgtattttgaatgtggttctctagatgatgcaatcgacgtgttcaagagcatgcctgagtacga |
7534970 |
T |
|
| Q |
233 |
tttgactactatatatattatgataaagcagctcgctaagaatgggtttgcagaagattcaattgatttatttactcaatttaaaaggtcaggactaaaa |
332 |
Q |
| |
|
|||||||||| ||| |||||||| ||| ||||| |||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
7534969 |
tttgactacttggcatactatgataatgcaactcgccaagaatgggtttccagaagattcaattgatatatttactcaatttaaaaacatgggactaaaa |
7534870 |
T |
|
| Q |
333 |
cctgatggccaaatgtttattggggtttttggtgcatgtagtatgttgggagatatt |
389 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7534869 |
cctgatggccaaatgtttattggagtttttggtgcatgtagtatgttgggagatatt |
7534813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 20 - 389
Target Start/End: Complemental strand, 7449644 - 7449275
Alignment:
| Q |
20 |
tcatattcttgtagatttggatcgttgtttgcgattaatgcaacaatgtgggaagaccaagtctcttgaagaggcaaaagttgtacacagatatgtttta |
119 |
Q |
| |
|
|||||||| ||| |||||| | |||||||||| |||||||| ||||||||| | ||||||||||| ||||||| ||||||||||||| ||| ||| |
|
|
| T |
7449644 |
tcatattcatgtggatttgcagcgttgtttgcaattaatgcgcatttgtgggaaggctaagtctcttgaggaggcaagagttgtacacagacatgctttg |
7449545 |
T |
|
| Q |
120 |
caacatttgtcacctcttaaagtcagcacatgcaatggaatattggagatgtattttcaatgtggttctgtagatgatgcagtcaacgtattcaagaaca |
219 |
Q |
| |
|
||||||||| ||||||| || |||||| |||| || ||||||||||||||||| ||||||||||| ||||||||||| || |||| ||||||| || |
|
|
| T |
7449544 |
caacatttgcatcctcttacggttagcacagacaatagagtattggagatgtattttgaatgtggttctctagatgatgcaatcgacgtgttcaagagca |
7449445 |
T |
|
| Q |
220 |
tgactgagcgcgatttgactactatatatattatgataaagcagctcgctaagaatgggtttgcagaagattcaattgatttatttactcaatttaaaag |
319 |
Q |
| |
|
|| ||||| ||||||||||||| ||| |||||||| ||| |||| |||||||| ||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
7449444 |
tgcctgagtacgatttgactacttggcatactatgataatgcaactcgtcaagaatggttttgcagaagattcaattgatatatttactcaatttaaaaa |
7449345 |
T |
|
| Q |
320 |
gtcaggactaaaacctgatggccaaatgtttattggggtttttggtgcatgtagtatgttgggagatatt |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7449344 |
catgggactaaaacctgatggccaaatgtttattggagtttttggtgcatgtagtatgttgggagatatt |
7449275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 78 - 198
Target Start/End: Original strand, 27578126 - 27578246
Alignment:
| Q |
78 |
aagtctcttgaagaggcaaaagttgtacacagatatgttttacaacatttgtcacctcttaaagtcagcacatgcaatggaatattggagatgtattttc |
177 |
Q |
| |
|
|||||||||||||||| |||||| ||||| ||||||| ||| ||||| ||| |||||| ||| |||| ||||||||| ||| | ||||||||||||| |
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|
| T |
27578126 |
aagtctcttgaagaggaaaaagtcgtacatagatatgctttgaaacatgtgttacctctcaaattcagaacatgcaatataatttgggagatgtatttta |
27578225 |
T |
|
| Q |
178 |
aatgtggttctgtagatgatg |
198 |
Q |
| |
|
| ||||||||||||| ||||| |
|
|
| T |
27578226 |
attgtggttctgtagttgatg |
27578246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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