View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16015_low_5 (Length: 307)
Name: NF16015_low_5
Description: NF16015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16015_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 9 - 289
Target Start/End: Complemental strand, 17233490 - 17233210
Alignment:
| Q |
9 |
gaagaatatgatcaaaagtttaaagaaataatcctttggaataaacatgatgaagtatttattgtctcaaataacaacactagaaagaaatttacagatg |
108 |
Q |
| |
|
|||||| ||||| ||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
17233490 |
gaagaaaatgattaaaagtttaaagaaatactcctttggaataaacaatatgaagtgtttattgtctcaaataacaacactagaaagaaattcacagatg |
17233391 |
T |
|
| Q |
109 |
ttgctctgtagcagtctggcaaatttttcaagagtgaagagtgcactatgaataggaactgcaaccgcaagcaataagaatgagaaccccataagggcct |
208 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17233390 |
ttgctctgaagcagtctggcaaatttttcaagagtgaagagtgcactatgaataagaaccgcaaccgcaagcaataagaatgagaaccccataagggcct |
17233291 |
T |
|
| Q |
209 |
aatatgtgcaacaacacccaccgcaaagaaatgacacaaggatgttgggaatcacagatgtttcagacttttgcctgagtt |
289 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
17233290 |
aatatgtgcaacaacacccaccacaaagaaatgacactaggatgttgggaatcacagatgtttcagacttttatctgagtt |
17233210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University