View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16015_low_6 (Length: 274)
Name: NF16015_low_6
Description: NF16015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16015_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 101 - 211
Target Start/End: Complemental strand, 30684465 - 30684355
Alignment:
| Q |
101 |
ggcaccgtacaatgtgccatagtcggtatcgacggcgttgtcgctgtcttctatcgccctcggatgatcttcatcctccttttggttaatcacttccatt |
200 |
Q |
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| T |
30684465 |
ggcaccgtacaatgtgccatattcggtatcgacggcgttgtcgctgtcttctatcgccctcggatgatcttcatcctccttttggttaatcacttccatt |
30684366 |
T |
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| Q |
201 |
ctgacgttgaa |
211 |
Q |
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| T |
30684365 |
ctgacgttgaa |
30684355 |
T |
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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 28485167 - 28485103
Alignment:
| Q |
138 |
ttgtcgctgtcttctatcgccctcggatgatcttcatcctccttttggttaatcacttccattct |
202 |
Q |
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| T |
28485167 |
ttgtcgctgtcttctaccgcccttggatgatcctcctcctccttctggttaatctcttccattct |
28485103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 33339033 - 33339070
Alignment:
| Q |
1 |
ccaccacgaactctttctcctcggccacgagcatacac |
38 |
Q |
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| T |
33339033 |
ccaccacgacctctatctcctcggccacgagcatacac |
33339070 |
T |
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