View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16015_low_7 (Length: 266)
Name: NF16015_low_7
Description: NF16015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16015_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 54 - 247
Target Start/End: Original strand, 30684939 - 30685132
Alignment:
| Q |
54 |
caatataagagaaatagacacaaagtcaccgtgattttcctgccttaaagttagcaaatccggatccgacttatatatgtttgacacatttttgtattga |
153 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30684939 |
caatataagagaaataaacacaaagtcaccgtgattttcctgccttaaagttagcaaatccggatccgacttatatatgtttgacacatttttgtattga |
30685038 |
T |
|
| Q |
154 |
atgactcgaaatgcagtgaagagacttcttctaagaaggcaagggaagatgatatttctggggtaggcctagctgatatagaggaggaattaat |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30685039 |
atgactcgaaatgcagtgaagagacttcttctaagaaggcaagggaagatgatatttctggggtaggcctagctgatatagaggaggaattaat |
30685132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 124 - 218
Target Start/End: Original strand, 28467729 - 28467823
Alignment:
| Q |
124 |
ttatatatgtttgacacatttttgtattgaatgactcgaaatgcagtgaagagacttcttctaagaaggcaagggaagatgatatttctggggta |
218 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
28467729 |
ttatatatgttcgacacatttttgtattgaatgactctaaatgcagtgaagagacttcttctaagaaggcaagggaagatgatgtttttggggta |
28467823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 124 - 218
Target Start/End: Original strand, 28486212 - 28486307
Alignment:
| Q |
124 |
ttatatatgtttgacacatttt-tgtattgaatgactcgaaatgcagtgaagagacttcttctaagaaggcaagggaagatgatatttctggggta |
218 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
28486212 |
ttatatatgtttgacacattttttgtattgaatgattctaaatgcagtgaagagacttcttctaagaaggcaggggaagatgatatttttggggta |
28486307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 20135565 - 20135608
Alignment:
| Q |
61 |
agagaaatagacacaaagtcaccgtgattttcctgccttaaagt |
104 |
Q |
| |
|
|||||||||||||| |||||||||| | |||||||||||||||| |
|
|
| T |
20135565 |
agagaaatagacactaagtcaccgtaactttcctgccttaaagt |
20135608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University