View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16016_high_1 (Length: 579)
Name: NF16016_high_1
Description: NF16016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16016_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 142 - 563
Target Start/End: Original strand, 31801785 - 31802201
Alignment:
| Q |
142 |
tggttaacatgtttaaaacaaatatgcatgttctagtggaaccagttaagtcttattgtgtgttttgttttggaaattgaataaagggtaaggttcctca |
241 |
Q |
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| T |
31801785 |
tggttaacatgtttaaaacaaatatgcatgttctagtggaatcaat-aagtcttattgtgtattttgttttggaaattgaataaagggtaaggttcctca |
31801883 |
T |
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| Q |
242 |
tgggatgaaaatagnnnnnnnnnccttcttttgtttgatagttatgcattttctaattcttatgggtgattctatgagtaaaatgagttctggacttctg |
341 |
Q |
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|||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31801884 |
tgggatgaaaatagtttttttttc-ttcttttgtttgatagttatgcattttctaattctaatgggtgattctatgagtaaaatgagttctggacttctg |
31801982 |
T |
|
| Q |
342 |
gtagttccatatgaataggctttgtgataagtaacccttttacttgctatgataatttattccggtgtggttgtcaatggctaatgtatttgttagaact |
441 |
Q |
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| T |
31801983 |
gtagttccatacgaataggatttgtgacaagtaacccttttacttcctatgataatttattccggtgtggttgtcaatgggtaatgtatttgttagaact |
31802082 |
T |
|
| Q |
442 |
tagattgcttccaatgaagtttgtctcaactggtagatttagatattatagtctatatnnnnnnnnnntagcggtttaaatcctcttgatccttgattag |
541 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||| ||||| |
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| T |
31802083 |
tagattgcttccaatgaagtttgtctcaactggtatatttagatattatagtctata---aataaaaatatcggtttaaatcctcttgatccttaattag |
31802179 |
T |
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| Q |
542 |
tagatcttttgtgggtactact |
563 |
Q |
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||||||||||||||| |||||| |
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| T |
31802180 |
tagatcttttgtgggcactact |
31802201 |
T |
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