View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16016_high_18 (Length: 272)
Name: NF16016_high_18
Description: NF16016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16016_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 23 - 165
Target Start/End: Original strand, 2501793 - 2501935
Alignment:
| Q |
23 |
agtggtgagactgagagtgagtttaagataacactttctccttcaaacaatgaaagaagtgatgcaaatctttcactgtcaccttcagaggatttattct |
122 |
Q |
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| T |
2501793 |
agtggtgagactgagagtgagtttaagataacactttctccttcaaacaatgaaagaagtgatgcaaatctttcactgtcaccttcagaggatttattct |
2501892 |
T |
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| Q |
123 |
ttaaaggaaagcttgttcagctgaaaccttcttccttcattct |
165 |
Q |
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| T |
2501893 |
ttaaaggaaagcttgttcagctgaaatcttcttccttcattct |
2501935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 215 - 261
Target Start/End: Original strand, 2501988 - 2502034
Alignment:
| Q |
215 |
tttactgcttcattgttaaaatcagcaaccaagtttcgtgtcttcat |
261 |
Q |
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| T |
2501988 |
tttactgcttcattgttaaaatcagcaaccaagtttcgtgtcttcat |
2502034 |
T |
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