View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16016_high_24 (Length: 206)
Name: NF16016_high_24
Description: NF16016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16016_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 2001528 - 2001703
Alignment:
| Q |
13 |
aatatgtgagtaattgaggtgaagagggcaaaagtcaagccgttaactgaaatatgttgggtaaaataagtgaaag-atcatgtgtagcatgtaattatc |
111 |
Q |
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| T |
2001528 |
aatatgtgggtaattgaggtgaagagggcaaaagtcaagccgtcaagtgaaatatgttgggtaaaataagtgatcgtagcatac-tagcatgtaattatc |
2001626 |
T |
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| Q |
112 |
tcaatggcaaggaatcattaagcacttacgaattaaagggtagtaatttgtccaaaatacaatcatgtgccaacaat |
188 |
Q |
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| T |
2001627 |
tcgatagcaaggaatcattaagcacttaaaaactaaagggtagtaatttgtctaaaatacaatcatgtgccaacaat |
2001703 |
T |
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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 947527 - 947471
Alignment:
| Q |
30 |
ggtgaagagggcaaaag--tcaagccgttaactgaaatatgttgggtaaaataagtg |
84 |
Q |
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| T |
947527 |
ggtgaagagggcaaaagcgtcaagccgtcaagtgaaatatgttaggtaaaataagtg |
947471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 77 - 188
Target Start/End: Original strand, 19025106 - 19025223
Alignment:
| Q |
77 |
aataagtgaaagatcatgtgtagcatgtaattatctcaatggcaaggaatcattaagcactta------cgaattaaagggtagtaatttgtccaaaata |
170 |
Q |
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||||||| |||| |||||||||||||||||||||||| || |||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
19025106 |
aataagtaaaaggtcatgtgtagcatgtaattatctcgatagcaaggaatcattaagcacttaaaaaccaaaaccaaagggtagtaatttgtccaaaata |
19025205 |
T |
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| Q |
171 |
caatcatgtgccaacaat |
188 |
Q |
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| T |
19025206 |
caatcatgtaccagcaat |
19025223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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