View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16016_high_5 (Length: 418)
Name: NF16016_high_5
Description: NF16016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16016_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 248 - 386
Target Start/End: Original strand, 42776116 - 42776254
Alignment:
| Q |
248 |
aatagcaagaagtgccttttcagcaagtgttcctacaaaagtaaaacgctttcttcattaccttcttcttcaagcaatcattatcatatgcttctccatg |
347 |
Q |
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| T |
42776116 |
aatagcaagaagtgccttttcagcaagtgttcctacaaaagtaaaacgctttcttcattaccttcttcttcaagcaatcattatcgtatgctgctccatg |
42776215 |
T |
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| Q |
348 |
ttcaaactagaaataactatataacaaaaaatcgataat |
386 |
Q |
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| T |
42776216 |
ttcaaactagaaataactgtataacaaaaaatcgataat |
42776254 |
T |
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Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 91 - 164
Target Start/End: Original strand, 42771541 - 42771614
Alignment:
| Q |
91 |
ttctatcggttaatatttcatccacaagaaaagtagtcaatcatccaaagcttaattatgaattaagatcataa |
164 |
Q |
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| T |
42771541 |
ttctatcagttaggatttcatcaacaagaaaagtaattaatcatccaaagcttaattttgaattaagatcataa |
42771614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 42771395 - 42771446
Alignment:
| Q |
11 |
ctacaagcagaaagatataatagtaagttttctctaatttgtacataaacta |
62 |
Q |
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| T |
42771395 |
ctacaaacagaaagatttaatagtaagttttctgtattttgtacataaacta |
42771446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 186 - 286
Target Start/End: Original strand, 760338 - 760438
Alignment:
| Q |
186 |
tctgaatccatgacttctgagtggacacaaacagcatatagaaaaccatcttaaggaggcaaaatagcaagaagtgccttttcagcaagtgttcctacaa |
285 |
Q |
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| T |
760338 |
tctgaagccatgacttcagagttaacacgaacagtatatggaaaaacaacttcaggaggcaaaacagcaagaagagctttttcagcaagtgctcctacaa |
760437 |
T |
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| Q |
286 |
a |
286 |
Q |
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| T |
760438 |
a |
760438 |
T |
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