View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16016_high_9 (Length: 385)

Name: NF16016_high_9
Description: NF16016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16016_high_9
NF16016_high_9
[»] chr1 (2 HSPs)
chr1 (19-328)||(14741790-14742099)
chr1 (247-328)||(50427821-50427902)
[»] chr5 (2 HSPs)
chr5 (247-327)||(9923678-9923758)
chr5 (247-327)||(1970069-1970149)
[»] chr4 (3 HSPs)
chr4 (247-327)||(23424762-23424842)
chr4 (247-328)||(39655607-39655688)
chr4 (261-327)||(39429640-39429706)
[»] chr3 (1 HSPs)
chr3 (247-327)||(43768438-43768518)
[»] chr2 (1 HSPs)
chr2 (247-327)||(20991696-20991776)
[»] chr8 (2 HSPs)
chr8 (261-324)||(42345812-42345875)
chr8 (281-328)||(7054495-7054542)


Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 19 - 328
Target Start/End: Original strand, 14741790 - 14742099
Alignment:
Q  19 gataatgagtacaagctttcaaacaagtaacttcaagaccaagtggcataggaacagcattcaaataaggttgtgcttgaataacaaacgtaagaccagg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14741790 gataatgagtacaagctttcaaacaagtaacttcaagaccaagtggcataggaacagcattcaaataaggttgtgcttgaataacaaacgtaagaccagg 14741889  T
Q  119 tcccattctttgtttcatctcagaaaactccaaatcttcaagtaactcagcagaagcaatctcaaaagccatagatttcatactctcacgtatccaactt 218  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14741890 tcccattctttgtttcatttcagaaaactccaaatcttcaagtaactcagcagaagcaatctcaaatgccatagatttcatactctcacgtatccaactt 14741989  T
Q  219 actacactttttccaacatctttccaaccaatagggtcacctatattctcatgcacgtgaagattcttgttcatattctcaaagggtagttgaatttcta 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14741990 actacactttttccaacatctttccaaccaatagggtcacctatattctcatgcacgtgaagattcttgttcatattctcaaagggtagttgaatttcta 14742089  T
Q  319 ttgctgcatc 328  Q
    ||||||||||    
T  14742090 ttgctgcatc 14742099  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 247 - 328
Target Start/End: Complemental strand, 50427902 - 50427821
Alignment:
Q  247 caatagggtcacctatattctcatgcacgtgaagattcttgttcatattctcaaagggtagttgaatttctattgctgcatc 328  Q
    ||||||||||||| ||||||||||| || |||| |||||||||||||||| |||||||||||||||||||||||| ||||||    
T  50427902 caatagggtcaccaatattctcatggacatgaacattcttgttcatattcccaaagggtagttgaatttctattgttgcatc 50427821  T

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Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 247 - 327
Target Start/End: Original strand, 9923678 - 9923758
Alignment:
Q  247 caatagggtcacctatattctcatgcacgtgaagattcttgttcatattctcaaagggtagttgaatttctattgctgcat 327  Q
    ||||||||||||| ||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9923678 caatagggtcaccaatattctcatggacatgaacattcttgttcatattctcaaagggtagttgaatttctattgctgcat 9923758  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 247 - 327
Target Start/End: Original strand, 1970069 - 1970149
Alignment:
Q  247 caatagggtcacctatattctcatgcacgtgaagattcttgttcatattctcaaagggtagttgaatttctattgctgcat 327  Q
    ||||||||||||| ||||||| ||| || |||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  1970069 caatagggtcaccaatattcttatggacatgaacattcttgttcatattctcaaaggatagttgaatttctattgctgcat 1970149  T

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Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 247 - 327
Target Start/End: Original strand, 23424762 - 23424842
Alignment:
Q  247 caatagggtcacctatattctcatgcacgtgaagattcttgttcatattctcaaagggtagttgaatttctattgctgcat 327  Q
    ||||||||||||| ||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  23424762 caatagggtcaccaatattctcatggacatgaacattcttgttcatattctcaaagggtagttgaatttctattgctgcat 23424842  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 247 - 328
Target Start/End: Original strand, 39655607 - 39655688
Alignment:
Q  247 caatagggtcacctatattctcatgcacgtgaagattcttgttcatattctcaaagggtagttgaatttctattgctgcatc 328  Q
    ||||||||||||| ||||||||||| || |||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  39655607 caatagggtcaccaatattctcatggacatgaacattcttattcatattctcaaagggtagttgaatttctattgctgcatc 39655688  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 261 - 327
Target Start/End: Complemental strand, 39429706 - 39429640
Alignment:
Q  261 atattctcatgcacgtgaagattcttgttcatattctcaaagggtagttgaatttctattgctgcat 327  Q
    ||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  39429706 atattctcatggacatgaacattcttgttcatattctcaaagggtagttgaatttctattgctgcat 39429640  T

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Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 247 - 327
Target Start/End: Complemental strand, 43768518 - 43768438
Alignment:
Q  247 caatagggtcacctatattctcatgcacgtgaagattcttgttcatattctcaaagggtagttgaatttctattgctgcat 327  Q
    ||||||||||||| ||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  43768518 caatagggtcaccaatattctcatggacatgaacattcttgttcatattctcaaagggtagttgaatttctattgctgcat 43768438  T

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Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 247 - 327
Target Start/End: Complemental strand, 20991776 - 20991696
Alignment:
Q  247 caatagggtcacctatattctcatgcacgtgaagattcttgttcatattctcaaagggtagttgaatttctattgctgcat 327  Q
    ||||||||||||| ||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20991776 caatagggtcaccaatattctcatggacatgaacattcttgttcatattctcaaagggtagttgaatttctattgctgcat 20991696  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 261 - 324
Target Start/End: Complemental strand, 42345875 - 42345812
Alignment:
Q  261 atattctcatgcacgtgaagattcttgttcatattctcaaagggtagttgaatttctattgctg 324  Q
    ||||||||||| || |||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  42345875 atattctcatggacatgaacattcttgttcatattctcaaaggatagttgaatttctattgctg 42345812  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 281 - 328
Target Start/End: Complemental strand, 7054542 - 7054495
Alignment:
Q  281 attcttgttcatattctcaaagggtagttgaatttctattgctgcatc 328  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7054542 attcttgttcatattcttaaagggtagttgaatttctattgctgcatc 7054495  T

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