View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16016_low_1 (Length: 691)
Name: NF16016_low_1
Description: NF16016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16016_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 314 - 675
Target Start/End: Original strand, 42913575 - 42913936
Alignment:
| Q |
314 |
aacattgtccttagtttcaggctcagctaccacattctcatccttaacaacatgttctgtctcagattcttcagctggtttttcttgaacaacctcaaca |
413 |
Q |
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| T |
42913575 |
aacattgtccttagtttcaggctcagctaccacattctcatccttaacaacatttactgtctcagactcttcagctggtttttcctgaacagcctcaaca |
42913674 |
T |
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| Q |
414 |
acagaatcaccgttctctttcgtttcctcaacattaaccgaatcaacattttcttttgtttcctcgacaggttcctttgtctcggtttgttcttccttct |
513 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42913675 |
acagaatcaccgttttctttcgtttcctcaacattaagagaattaccgttttcttttgtttcctcgacaggttcctttgtctcggtttgttcttccttct |
42913774 |
T |
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| Q |
514 |
ttgttgcctcttctgtatctttcgcaggaacaacaacttcttctaccacctctttagcctcagctttaaccactggtttggcttcttcagctgaagattc |
613 |
Q |
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| T |
42913775 |
ttgtttcctcttctgtatctttcacaggcacaacaacttcttctaccacctctttagtctcagctttaaccaaaggtttggcttcttcagctgaagattc |
42913874 |
T |
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| Q |
614 |
ttctttggtttctgatgctgctagtgtgattggactctcaacgatttcttcggtggtctttt |
675 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42913875 |
ttctttggtttctgatgctgctagtgtgattggactctcaacgatttcttcggtggtttttt |
42913936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 17 - 231
Target Start/End: Original strand, 42913275 - 42913492
Alignment:
| Q |
17 |
aagtactatagctattttattacaccactaaacaagtaacaagaagaagacatt---caacaagacataatgaaacttaacttaaagtgattaatgtaat |
113 |
Q |
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| T |
42913275 |
aagtactatagctattttattacaccactaaacaagtaacaagaaaaagacattaaacaacaagacatagtgaaacttaacttaaagtgattaatgtaat |
42913374 |
T |
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| Q |
114 |
taaccactctctctaattaaacacttccataaacttcacacattttctccttattcactcttctcaattggagcctcttcttcattcttctcaatttttg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42913375 |
taaccactctctctaattaaacacttccataaacttcacacattttctccttattcactcttctcaattggagcctcttcttcattcttctcaatttttg |
42913474 |
T |
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| Q |
214 |
catcattgttggtgatca |
231 |
Q |
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| T |
42913475 |
catcattgttggtgatca |
42913492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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