View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16016_low_11 (Length: 383)
Name: NF16016_low_11
Description: NF16016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16016_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 340
Target Start/End: Complemental strand, 2411180 - 2410859
Alignment:
| Q |
19 |
tctttgtctaaaaacaacagcatcgtgctgaaaatcagaatcctcatgaggagtatgggataccactattgaatnnnnnnntcagccaacaatgagcagc |
118 |
Q |
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| T |
2411180 |
tctttgtctaaaaacaacagcatcgtgctgaaaatcagaatcctcatgaggagtatgggataccactattgaataaaaaaatcagccaacaatgagcagc |
2411081 |
T |
|
| Q |
119 |
gtcttagaatattaggatattgctaagtgctaacattacttaatatttgtccaaggtggccttgatcaaatttgttgtgctcataatagtttgtaaattc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2411080 |
ttcttagaatattaggatattgctaagtgctaacattgcttaatatttgtccaaggtggccttgatcaaatttgttgtgctcataatagtttgtaaattc |
2410981 |
T |
|
| Q |
219 |
ttttgggcaaacaataccactcaatcattagctatagtagaaattgaaagattagtttattggtcagatgaattagttgcaactcctttaagagttagtt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2410980 |
ttttgggcaaacaataccactcaatcattagctatagtagaaattgaaagattagtttattggtcagatgaattagttgcaactcctttaagagttagtt |
2410881 |
T |
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| Q |
319 |
agtcttcttttgatcaaaggta |
340 |
Q |
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|||||||||||||||||||||| |
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| T |
2410880 |
agtcttcttttgatcaaaggta |
2410859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 2413108 - 2413066
Alignment:
| Q |
19 |
tctttgtctaaaaacaacagcatcgtgctgaaaatcagaatcc |
61 |
Q |
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|||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
2413108 |
tctttgtccaaaaacaacagcatcgtgctgaaaataagaatcc |
2413066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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