View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16016_low_12 (Length: 381)
Name: NF16016_low_12
Description: NF16016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16016_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 8752095 - 8752455
Alignment:
| Q |
1 |
tacaatttaatttaagtgacaacaaatacacttataataaatatttaaagagtttggatatcggtaataataaatgttttatttatattttcaaacagtg |
100 |
Q |
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| T |
8752095 |
tacaatttaatttaagtgacaacaaatacacttataataaatatttacagaatttggatat---------------ttttatttatattttcaaacagtg |
8752179 |
T |
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| Q |
101 |
cattatacattgaattgaacttaagtatctaatatttctatgattgtacgaaacattacaattttttaaaattacagaaactttacaaattttatcaact |
200 |
Q |
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| T |
8752180 |
cattatgcattgaattgaacttaagtatctaatatttctatgattgtatgaaacattacaatttttaaaaattacagaaactttacaaattttatcaact |
8752279 |
T |
|
| Q |
201 |
attaagaattattagtttgatggtttcattgatgaaaattaatgtatac--------atcaagcagggttagtggatccccatatatac----acagtta |
288 |
Q |
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| T |
8752280 |
attaagaattattagtttgatggtttcattgatgaaaattaatgtatacagtgagttatcaagcagggttagtggatccccatatatacacaaacaatta |
8752379 |
T |
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| Q |
289 |
tctaaatgaataaataattatctttcc-ttcattaaccaaacaaaatataaagggagcaagaactaacttatattc |
363 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8752380 |
tctaaatgaataaataattatctttcctttcattaaccaaacaaaatataaagggagcaagaactaacttatattc |
8752455 |
T |
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