View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16016_low_15 (Length: 324)
Name: NF16016_low_15
Description: NF16016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16016_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 319
Target Start/End: Complemental strand, 24312903 - 24312598
Alignment:
| Q |
13 |
atattattggaggtggaattggtctgtccaatagtgattgagagagattccgacataatttccaacaaagagtaataaacaaaactaatctctttaataa |
112 |
Q |
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| T |
24312903 |
atattattggaggtggaattggtctgtccaatagtgattgagagagattccaacataatttccaacaaagaataataaacaaaactaatctctttaataa |
24312804 |
T |
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| Q |
113 |
cacgcacttgttttatgaagaccctcttaaggaaatgatgatagagtcgtgtaaacatagtagta-nnnnnnnngttcaaatcaatatgtagggtcaaca |
211 |
Q |
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| T |
24312803 |
cacgcacttgttttgtgaagaccctcttaaggaaatgatgatagagtcgtgtgaacata-tagtatttttttttgttcaaatcaatatgtagggtcaaca |
24312705 |
T |
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| Q |
212 |
gtctcaaagcttattaatgtgttaaaattgacagatataaaattttaattgaaaatttccataagaaatattctcttttattaacagcagaaaaatttcc |
311 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24312704 |
gtctcaaagcttattaatgtgttaaaa-tgacagatataaaattttaattgaaaatttccataagaaatattctcttttattaacagcagaaaaatttcc |
24312606 |
T |
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| Q |
312 |
atgtattc |
319 |
Q |
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|||||||| |
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| T |
24312605 |
atgtattc |
24312598 |
T |
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