View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16016_low_17 (Length: 286)
Name: NF16016_low_17
Description: NF16016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16016_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 46656088 - 46655814
Alignment:
| Q |
1 |
aacaaaaagctgaatattcttgttatttctgttatatcagctgcatgtgtgacaagtttgatgatat---ctgttcctgtagcctgcttgagtgcaacaa |
97 |
Q |
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| T |
46656088 |
aacaaaaagctgaatattcttgttatttctgttatatcagctgcatgtgtgacaagtttgatgatatgatctgttcctgtagcctgcatgagtgcaacaa |
46655989 |
T |
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| Q |
98 |
gttgaagaagttcttctgtccaaggagtgataccatccacaaagcaggatgtaataatttttccgtgaatattatgatttctcttatgtt-ccacactgg |
196 |
Q |
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| T |
46655988 |
gttgaagaagttcttctgtcgaaggagtgataccatccacaaagcaggacgcaataattttgccgtgtatattatgatttctcttatgttaacacaatag |
46655889 |
T |
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| Q |
197 |
ccgtaaggtgagacgctgcctgaacaaacatgaaaacaatgtttgtcaagcagatttacataataattcaaaaat |
271 |
Q |
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| T |
46655888 |
ccgtaaggtgagaagctgcctgaaaaaacatgaaaacaatgtttgtcaaggaaatttacataataattcaaaaat |
46655814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 7 - 271
Target Start/End: Original strand, 47103145 - 47103410
Alignment:
| Q |
7 |
aagctgaatattcttgttatttctgttatatcagctgcatgtgtgacaagtttgatgatatctgttcctgtagcctgcttgagtgcaacaagttgaagaa |
106 |
Q |
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| T |
47103145 |
aagctgaatattcttgttatttctgttatatcagctgcatgtgcgacaagtttgatgatatctgttcctgtagcctgcatgagtgcaacaagttgaagaa |
47103244 |
T |
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| Q |
107 |
gttcttctgtccaaggagtgataccatccacaaagcaggatgtaataatttttccgtgaatattatgatttctcttatgtt-ccacactggccgtaaggt |
205 |
Q |
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| T |
47103245 |
gttcttctgtcggaggagtgataccatccacaaagcaggacgcaataattttgccgtgtatattatgatttctcttatgttaacacaatagccgtaaggt |
47103344 |
T |
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| Q |
206 |
gagacgctgcctgaacaaacatgaaaacaatgtttgtcaagcagatttacataataattcaaaaat |
271 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
47103345 |
gagaagctgcctgaaaaaacatgaaaacaatgtttgtcaaggaaatttacataataattcaaaaat |
47103410 |
T |
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