View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16016_low_22 (Length: 234)
Name: NF16016_low_22
Description: NF16016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16016_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 42026059 - 42026261
Alignment:
| Q |
14 |
ttatacttaattagaacttagatgtaaagtaattaatgtatggtatataaaatggtaagagtagaaaagataagagggaaaaaagaaagtataaccagaa |
113 |
Q |
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| T |
42026059 |
ttatacttaattagaacttagatgtaaagtaattaatgtatggtatataaaatggtaagagtagaaaagataagagggaaaaaagaaagtataaccagaa |
42026158 |
T |
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| Q |
114 |
ggttatgatgagttggggagaagaaagagtgtcccaaatgaaactgattaggggatggcagaagtaatgcacgcatgttaactggaagcagattagtgca |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42026159 |
ggttatgatgagttggggagaagaaagagtgtcccaaatgaaactgattaggggatggcagaagtaatgcacgcatgttgactggaagcagattagtgca |
42026258 |
T |
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| Q |
214 |
atg |
216 |
Q |
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||| |
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| T |
42026259 |
atg |
42026261 |
T |
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