View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16016_low_7 (Length: 417)
Name: NF16016_low_7
Description: NF16016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16016_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 19 - 406
Target Start/End: Complemental strand, 6313978 - 6313591
Alignment:
| Q |
19 |
gccctgaggtgcaacaagcagcattaaatggaaggaatttgcttgggtttggggagcatacagacccacaagtcatttctgtcttgagatctaatagcac |
118 |
Q |
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| T |
6313978 |
gccctgaggtgcaacaagcagcattgaatggaaggaatttgcttgggtttggggagcatacagacccacaagtcatttctgtcttgagatctaatagcac |
6313879 |
T |
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| Q |
119 |
atcaggactgcaaatctgtctcactgatggaacttgggtttcagttccacctgatcacacttcttttttcatcaatgttggtgatactcttcaggttcgt |
218 |
Q |
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| T |
6313878 |
atcaggactgcaaatctgtctcactgatggaacttgggtttcagttccacctgatcacacttcttttttcatcaatgttggtgatactcttcaggttcgt |
6313779 |
T |
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| Q |
219 |
agttttcgatatcaattagatatgttattgatgcgaaatagctactacatactttgtcgataataacttattcttttaacttttctttattcacaagatt |
318 |
Q |
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| T |
6313778 |
agttttcgatatcgattagatatgttgttgatgcaaaatagctactacatactttgtcgataataacttattcttttaacttttctttattcacaagact |
6313679 |
T |
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| Q |
319 |
cgaattcaagacctttctcaacatatacgagtcatgttaccgagtgtctttaagacgctgactaatgttgatcttttaagttatttca |
406 |
Q |
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| T |
6313678 |
cgaattcaacacctttctcaacatatacgagtcatgttaccgagtgtctttaagacactgactaatgtcgatcttttaagttatttca |
6313591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 29877324 - 29877254
Alignment:
| Q |
144 |
gatggaacttgggtttcagttccacctgatcacacttcttttttcatcaatgttggtgatactcttcaggt |
214 |
Q |
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| T |
29877324 |
gatggaagttggatttcagtcccacctgatcatagatccttcttcatcaatgttggtgattctcttcaggt |
29877254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 54 - 202
Target Start/End: Original strand, 38545355 - 38545503
Alignment:
| Q |
54 |
aatttgcttgggtttggggagcatacagacccacaagtcatttctgtcttgagatctaatagcacatcaggactgcaaatctgtctcactgatggaactt |
153 |
Q |
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|||||| |||| |||||||||||||| |||||||| | || |||||| | || ||||||| |||||||||||||||| ||||||| ||||| |||| |
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| T |
38545355 |
aatttgattggatttggggagcatactgacccacagataatatctgtcctaaggtctaataatgcatcaggactgcaaatttgtctcagagatgggactt |
38545454 |
T |
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| Q |
154 |
gggtttcagttccacctgatcacacttcttttttcatcaatgttggtga |
202 |
Q |
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| T |
38545455 |
gggtttcaatcccacctgatcacacttctttcttcataagtgttggtga |
38545503 |
T |
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