View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16016_low_8 (Length: 402)
Name: NF16016_low_8
Description: NF16016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16016_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 17597223 - 17596832
Alignment:
| Q |
1 |
agtgagggagaaacaactgagaaaaaagttgagcctattttgttcttatgaacaaaagagaaacataattagataggaagagagaaaagaagataggaat |
100 |
Q |
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| T |
17597223 |
agtgagggagaaacaactgagaaaaaagttgagcctattttgttcttatgaacaaaagagaaacataattagataggaagagagaaaagaagataggaat |
17597124 |
T |
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| Q |
101 |
ttacccaaaagaaaccacaagaccgaagaggaaacatttgcacaagaatccaaagaaagttgtcacaactaacctattcctttgatatcctctaaatttg |
200 |
Q |
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| T |
17597123 |
ttacccaaaagaaaccacaagaccgaagaggaaacatttgcacaagaatccaaagaaagttgtcacaactaacctattcctttgatatcctctaaatttg |
17597024 |
T |
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| Q |
201 |
atcaaaatggtgtcacctttgctggaatcttagaagtctaaccgaagttacattaccctcaatactccacctatcctcgtccaatgatatgtccttaaaa |
300 |
Q |
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| T |
17597023 |
atcaaaatggtgtcacctttgctggaatcttaaaagtctaaccgaagttacattaccctcaatactccacctatcctcgtccaatgatatgtccttaaaa |
17596924 |
T |
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| Q |
301 |
caagtactagtcttatgcatttccccctagatttggagaaaacttctgtgatggcttacatgctcttctgcctatattttctactccctatg |
392 |
Q |
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| T |
17596923 |
caaatactagtcttatgcatttccccctagatttggagaaaacttctgtgatggcttacatgctcttctgcctatattttctactccctatg |
17596832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 240
Target Start/End: Original strand, 16983080 - 16983167
Alignment:
| Q |
152 |
aaagaaagttgtcacaactaacctattcctttgatatcctctaaatttgatcaaaatggtgtcacctttgctggaatcttagaagtcta |
240 |
Q |
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||||||||||| ||||| |||| |||||||||||| |||| | |||||||||||| ||| ||||||| ||||||||||| |||||| |
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| T |
16983080 |
aaagaaagttgccacaaataacatattcctttgatctccttaatatttgatcaaaa-agtgccaccttttgtggaatcttagcagtcta |
16983167 |
T |
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