View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16016_low_9 (Length: 387)
Name: NF16016_low_9
Description: NF16016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16016_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 43576393 - 43576760
Alignment:
| Q |
1 |
caagaggctcagcaaaacaacaaacaaaatcagcttcatgatttctaaatattccaccacaagctgagttgccaggatttccatttgaagctccatcaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43576393 |
caagaggctcagcaaaacaacaaacaaaatcagcttcatgatttctaaatattccaccacaagctgagttgccaggattttcatttgaagctccatcaat |
43576492 |
T |
|
| Q |
101 |
attgcacttaatccaaaattgaagaggaggactccaaatcacttccttgataattggagctctaggttgatgagtagagacattgaaggtcttgataatg |
200 |
Q |
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| T |
43576493 |
attgcacttaatccaaaattgaagaggaggactccaaatcacttccttgataattggaactctaggttgatgagtagagacattgaaggtcttgataatg |
43576592 |
T |
|
| Q |
201 |
gtgaagtctcttatggggtttgtagaatgtttttcttgttgcatttcctgctatagaagtgtttgcaataatcagtgagatagctgcagatttccaattg |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
43576593 |
gtgaagtctcttatggagtttgtagaatgtttttcttgttgcatttcctgctatagaagtgtttgcaataatcattgagata---gcagatttccaattg |
43576689 |
T |
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| Q |
301 |
acagtgttgttattgaatcttgctttgatttctagcaaaccagatgctgttaaataagttgatcaaagcag |
371 |
Q |
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| T |
43576690 |
acagtgttgttattgaatcttgctttgatttctagcaaaccagatgctgttaaataagttgatcaaagcag |
43576760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 35 - 371
Target Start/End: Original strand, 32247359 - 32247690
Alignment:
| Q |
35 |
ttcatgatttctaaatattccaccacaagctgagttgccaggatttccatttgaagctccatcaatattgcacttaatccaaaattgaagaggaggactc |
134 |
Q |
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| T |
32247359 |
ttcatgatttctaaatattccaccacaagctgagctgccaggatttccatttgaagctccatcaatattgcacttaatccaagattgaagaggaggactc |
32247458 |
T |
|
| Q |
135 |
caaatcacttccttgataattggagctctaggttgatgagtagagacattgaaggtcttgataatggtgaagtctcttatggggtttgtagaatgttttt |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||| |
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| T |
32247459 |
caaatcacttccttgataattggagctctaggttgatgagtagagacattgaaggtcttgataatgatgaagtctcttatggagtttgtagaa-gttttt |
32247557 |
T |
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| Q |
235 |
cttgttgcatttcctgctatagaagtgtttgcaataatcagtgagatagctgcagatttccaattgacagtgttgttattgaatcttgctttgatttcta |
334 |
Q |
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| T |
32247558 |
catgttgcatttcctgctatagaagtgtttgcaataatcattgcgata---gcagatttccaattgacagttttgttattaaatcttgc-ttgatttcta |
32247653 |
T |
|
| Q |
335 |
gcaaaccagatgctgttaaataagttgatcaaagcag |
371 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
32247654 |
gcaaaccagatgctgttaaataagttgatcaaagcag |
32247690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 21852377 - 21852563
Alignment:
| Q |
1 |
caagaggctcagcaaaacaacaaacaaaatcagcttcatgatttctaaatattccaccacaagctgagttgccaggatttccatttgaagctccatcaat |
100 |
Q |
| |
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||||||| |||| ||| || |||| |||||| ||||||| || ||||| || || |||||| | |||| || ||||||||| | |||||||||||||| |
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| T |
21852377 |
caagaggttcagtaaagcagcaaagaaaatctgcttcattgttcctaaaaatgcctccacaacttaagtttcctggatttccaatggaagctccatcaat |
21852476 |
T |
|
| Q |
101 |
attgcacttaatccaa-aattgaagaggaggactccaaatcacttccttgataattggagctctaggttgatgagtagagacattgaa |
187 |
Q |
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| T |
21852477 |
attgcacttaatccaagaattg-agaggtggactccagataacttctttaatagtaggagctctaggatgatgggtggaaacattgaa |
21852563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 10512802 - 10512882
Alignment:
| Q |
36 |
tcatgatttctaaatattccaccacaagctgagttgccaggatttccatttgaagctccatcaatattgcacttaatccaa |
116 |
Q |
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||||||| |||||| || |||||||| | ||||| |||||||| ||||||||||| ||| | || ||||| ||||||||| |
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| T |
10512802 |
tcatgatctctaaaaataccaccacatacagagtttccaggattaccatttgaagcaccaccgatgttgcatttaatccaa |
10512882 |
T |
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