View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16017_high_1 (Length: 247)
Name: NF16017_high_1
Description: NF16017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16017_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 8 - 246
Target Start/End: Original strand, 38246247 - 38246485
Alignment:
| Q |
8 |
catcatcatcgacgaaggatcttacgagactattcaacggtctcactttaatcgctaacgaatatgccaaacgttcattacccgccagaacttcagattt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38246247 |
catcatcatcgacgaaggatcttacgagactattcaacggtctcactttaatcgctaacgaatatgccaaacgttcattacccgccagaacttcagattt |
38246346 |
T |
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| Q |
108 |
cgaaaccctaattaaaaccgctcttctctccgccaccaacgtctccggcatcaccaaaggacaacttcgtcaattctcccctcctcaaccctccaacgac |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38246347 |
cgaaaccctaattaaaaccgctcttctctccgccaccaacgtctccggcatcaccaaaggacaacttcgtcaattctcccctcctcaaccctccaacgac |
38246446 |
T |
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| Q |
208 |
tcttcctccgattcttcttccagtactccttccgttgtt |
246 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
38246447 |
tcttcctccgattcttcttccagtactccttccgttgtt |
38246485 |
T |
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