View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16017_low_1 (Length: 404)
Name: NF16017_low_1
Description: NF16017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16017_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 2 - 390
Target Start/End: Complemental strand, 1681410 - 1681022
Alignment:
| Q |
2 |
gaatgcacagacagactaccctgttactgatcttctgcagatgatgggtcatgccagtcgtcctttggtggaccattctggaaagtgtgtcatcttatgc |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1681410 |
gaatgcacagacagactaccctgttactgatcttctgcagatgatgggtcatgccagtcgtcctttggtggaccattctggaaagtgtgtcatcttatgc |
1681311 |
T |
|
| Q |
102 |
catgcaccttctaaggagtattacaaaaagtttttgttcgaagcattcccggttgaaagtcatcttcatcactttttacatgataatttgaatgctgaaa |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1681310 |
catgcaccttctaaggagtattacaaaaagtttttgttcgaagcattcccggttgaaagtcatcttcatcactttttacatgataatatgaatgctgaaa |
1681211 |
T |
|
| Q |
202 |
ttgttgctggaattattgaaaacaagcaagacgctgtagattatcttacatggacattcatgtacaggcgtctcacccagaatcccaactattacaattt |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1681210 |
ttgttgctggaattattgaaaacaagcaagacgatgtagattatcttacatggacattcatgtacaggcgtctcacccagaatcccaactattacaattt |
1681111 |
T |
|
| Q |
302 |
acaaggagttagtcacaggcatctttctgattacctctctgagttggtggaaaatacattgagtgatttggaagcaagcaagtgtgttt |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1681110 |
acaaggagttagtcacaggcatctttctgattacctctctgagttggtggaaaatacattgagtgatttggaagcaagcaagtgtgttt |
1681022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 2 - 390
Target Start/End: Original strand, 2799318 - 2799706
Alignment:
| Q |
2 |
gaatgcacagacagactaccctgttactgatcttctgcagatgatgggtcatgccagtcgtcctttggtggaccattctggaaagtgtgtcatcttatgc |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2799318 |
gaatgcacagacagactaccctgttactgatcttctgcagatgatgggtcatgccagtcgtcctttggtggaccattctggaaagtgtgtcatcttatgc |
2799417 |
T |
|
| Q |
102 |
catgcaccttctaaggagtattacaaaaagtttttgttcgaagcattcccggttgaaagtcatcttcatcactttttacatgataatttgaatgctgaaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2799418 |
catgcaccttctaaggagtattacaaaaagtttttgttcgaagcattcccggttgaaagtcatcttcatcactttttacatgataatttgaatgctgaaa |
2799517 |
T |
|
| Q |
202 |
ttgttgctggaattattgaaaacaagcaagacgctgtagattatcttacatggacattcatgtacaggcgtctcacccagaatcccaactattacaattt |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2799518 |
ttgttgctggaattattgaaaacaagcaagacgttgttgattatcttacatggacattcatgtacaggcgtctcacccagaatcccaactattacaattt |
2799617 |
T |
|
| Q |
302 |
acaaggagttagtcacaggcatctttctgattacctctctgagttggtggaaaatacattgagtgatttggaagcaagcaagtgtgttt |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2799618 |
acaaggagttagtcacaggcatctttctgattacctctctgagttggtggaaaatacattgagtgatttggaagcaagcaagtgtgttt |
2799706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 2 - 390
Target Start/End: Original strand, 29268494 - 29268882
Alignment:
| Q |
2 |
gaatgcacagacagactaccctgttactgatcttctgcagatgatgggtcatgccagtcgtcctttggtggaccattctggaaagtgtgtcatcttatgc |
101 |
Q |
| |
|
|||||| |||||||| ||||||||||||||| | ||||| ||||||||||||||||| |||||||| || ||| |||||||||| ||||||||||||||| |
|
|
| T |
29268494 |
gaatgcccagacagattaccctgttactgatttgctgcaaatgatgggtcatgccagccgtcctttagtagacaattctggaaaatgtgtcatcttatgc |
29268593 |
T |
|
| Q |
102 |
catgcaccttctaaggagtattacaaaaagtttttgttcgaagcattcccggttgaaagtcatcttcatcactttttacatgataatttgaatgctgaaa |
201 |
Q |
| |
|
|| |||||| || ||||| ||||| |||||| ||| ||||||||||| |||||||| |||||||||||||| || || || || ||||||||||||| |
|
|
| T |
29268594 |
cacgcacctcgcaaagagtactacaagaagtttctgtatgaagcattcccagttgaaagccatcttcatcacttcttgcacgacaacttgaatgctgaaa |
29268693 |
T |
|
| Q |
202 |
ttgttgctggaattattgaaaacaagcaagacgctgtagattatcttacatggacattcatgtacaggcgtctcacccagaatcccaactattacaattt |
301 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||| |
|
|
| T |
29268694 |
ttgttgctgggattattgaaaacaagcaagatgctgttgattatcttacatggacattcatgtacaggaggctcacacagaatcccaactattacaattt |
29268793 |
T |
|
| Q |
302 |
acaaggagttagtcacaggcatctttctgattacctctctgagttggtggaaaatacattgagtgatttggaagcaagcaagtgtgttt |
390 |
Q |
| |
|
||||||||| |||||||| ||||||||||| ||||||| ||| ||||||||||||||||||| || || ||||||||||||||||||| |
|
|
| T |
29268794 |
acaaggagtaagtcacagacatctttctgaccacctctcagagatggtggaaaatacattgagcgacttagaagcaagcaagtgtgttt |
29268882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University